Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | CH578_RS02920 | Genome accession | NZ_CP031690 |
| Coordinates | 582241..582747 (+) | Length | 168 a.a. |
| NCBI ID | WP_011272049.1 | Uniprot ID | Q4QNA7 |
| Organism | Haemophilus influenzae strain P617-9224 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 577241..587747
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH578_RS02900 (CH578_02900) | - | 577334..577663 (-) | 330 | WP_005629464.1 | YbaB/EbfC family nucleoid-associated protein | - |
| CH578_RS02905 (CH578_02905) | - | 577832..578677 (-) | 846 | WP_011272052.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| CH578_RS02910 (CH578_02910) | - | 578750..581344 (-) | 2595 | WP_070828392.1 | penicillin-binding protein 1A | - |
| CH578_RS02915 (CH578_02915) | comA | 581443..582240 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| CH578_RS02920 (CH578_02920) | comB | 582241..582747 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| CH578_RS02925 (CH578_02925) | comC | 582744..583265 (+) | 522 | WP_070828391.1 | competence protein ComC | Machinery gene |
| CH578_RS02930 (CH578_02930) | comD | 583262..583675 (+) | 414 | WP_070828390.1 | pilus assembly protein PilP | Machinery gene |
| CH578_RS02935 (CH578_02935) | comE | 583685..585022 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| CH578_RS02940 (CH578_02940) | - | 585035..585721 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| CH578_RS02945 (CH578_02945) | nfuA | 585797..586393 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| CH578_RS02950 (CH578_02950) | nudC | 586460..587254 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19697.54 Da Isoelectric Point: 7.4684
>NTDB_id=310194 CH578_RS02920 WP_011272049.1 582241..582747(+) (comB) [Haemophilus influenzae strain P617-9224]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQTSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQTSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
Nucleotide
Download Length: 507 bp
>NTDB_id=310194 CH578_RS02920 WP_011272049.1 582241..582747(+) (comB) [Haemophilus influenzae strain P617-9224]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAAGCGCAGCAAA
CATCTTTTGAACAACTTAATCAGCAACTTCACAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAAGCGCAGCAAA
CATCTTTTGAACAACTTAATCAGCAACTTCACAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comB | Haemophilus influenzae Rd KW20 |
98.81 |
100 |
0.988 |