Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   CH582_RS09100 Genome accession   NZ_CP031689
Coordinates   1822532..1822879 (-) Length   115 a.a.
NCBI ID   WP_162877186.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P621-7028     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1817532..1827879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH582_RS09080 (CH582_09080) bioB 1817924..1818922 (-) 999 WP_105894438.1 biotin synthase BioB -
  CH582_RS09085 (CH582_09085) thiQ 1819035..1819682 (-) 648 WP_105894437.1 thiamine ABC transporter ATP-binding protein -
  CH582_RS09090 (CH582_09090) thiP 1819666..1821282 (-) 1617 WP_116941563.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  CH582_RS09095 (CH582_09095) thiB 1821287..1822285 (-) 999 WP_116941565.1 thiamine ABC transporter substrate binding subunit -
  CH582_RS09100 (CH582_09100) comE1/comEA 1822532..1822879 (-) 348 WP_162877186.1 helix-hairpin-helix domain-containing protein Machinery gene
  CH582_RS09105 (CH582_09105) ispH 1823047..1823991 (-) 945 WP_014550967.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  CH582_RS09110 (CH582_09110) lspA 1823988..1824503 (-) 516 WP_014550968.1 signal peptidase II -
  CH582_RS09115 (CH582_09115) - 1824573..1826132 (-) 1560 WP_116941566.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12369.19 Da        Isoelectric Point: 8.0085

>NTDB_id=310177 CH582_RS09100 WP_162877186.1 1822532..1822879(-) (comE1/comEA) [Haemophilus influenzae strain P621-7028]
MKLMKTLFTSFVLCGALVASSSFAEEKATEQTAQPVVATQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIL
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=310177 CH582_RS09100 WP_162877186.1 1822532..1822879(-) (comE1/comEA) [Haemophilus influenzae strain P621-7028]
ATGAAATTAATGAAAACATTATTCACTTCGTTTGTATTGTGTGGTGCGCTGGTTGCTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTTTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

93.75

97.391

0.913
  comEA/comE1 Glaesserella parasuis strain SC1401

58.491

92.174

0.539
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383

Multiple sequence alignment