Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | CH597_RS02940 | Genome accession | NZ_CP031688 |
| Coordinates | 583436..583849 (+) | Length | 137 a.a. |
| NCBI ID | WP_070828390.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain P636-8296 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 578436..588849
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH597_RS02920 (CH597_02915) | - | 578924..581518 (-) | 2595 | WP_070828392.1 | penicillin-binding protein 1A | - |
| CH597_RS02925 (CH597_02920) | comA | 581617..582414 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| CH597_RS02930 (CH597_02925) | comB | 582415..582921 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| CH597_RS02935 (CH597_02930) | comC | 582918..583439 (+) | 522 | WP_070828391.1 | competence protein ComC | Machinery gene |
| CH597_RS02940 (CH597_02935) | comD | 583436..583849 (+) | 414 | WP_070828390.1 | pilus assembly protein PilP | Machinery gene |
| CH597_RS02945 (CH597_02940) | comE | 583859..585196 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| CH597_RS02950 (CH597_02945) | - | 585209..585895 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| CH597_RS02955 (CH597_02950) | nfuA | 585971..586567 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| CH597_RS02960 (CH597_02955) | nudC | 586634..587428 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| CH597_RS02965 (CH597_02960) | - | 587464..588054 (+) | 591 | WP_005686892.1 | YjaG family protein | - |
| CH597_RS02970 (CH597_02965) | - | 588194..588466 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15629.73 Da Isoelectric Point: 4.4355
>NTDB_id=310125 CH597_RS02940 WP_070828390.1 583436..583849(+) (comD) [Haemophilus influenzae strain P636-8296]
MKYWFFLTALLFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKYWFFLTALLFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=310125 CH597_RS02940 WP_070828390.1 583436..583849(+) (comD) [Haemophilus influenzae strain P636-8296]
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
95.62 |
100 |
0.956 |
| comD | Haemophilus influenzae Rd KW20 |
94.891 |
100 |
0.949 |