Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | CH611_RS02895 | Genome accession | NZ_CP031685 |
| Coordinates | 573270..573776 (+) | Length | 168 a.a. |
| NCBI ID | WP_005656467.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain P650-8603 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 568270..578776
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH611_RS02875 (CH611_02875) | - | 568379..568708 (-) | 330 | WP_005629464.1 | YbaB/EbfC family nucleoid-associated protein | - |
| CH611_RS02880 (CH611_02880) | - | 568861..569706 (-) | 846 | WP_116945280.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| CH611_RS02885 (CH611_02885) | - | 569779..572373 (-) | 2595 | WP_116945279.1 | penicillin-binding protein 1A | - |
| CH611_RS02890 (CH611_02890) | comA | 572472..573269 (+) | 798 | WP_038439365.1 | pilus assembly protein PilM | Machinery gene |
| CH611_RS02895 (CH611_02895) | comB | 573270..573776 (+) | 507 | WP_005656467.1 | competence protein ComB | Machinery gene |
| CH611_RS02900 (CH611_02900) | comC | 573773..574294 (+) | 522 | WP_116945278.1 | competence protein ComC | Machinery gene |
| CH611_RS02905 (CH611_02905) | comD | 574291..574704 (+) | 414 | WP_061724236.1 | pilus assembly protein PilP | Machinery gene |
| CH611_RS02910 (CH611_02910) | comE | 574714..576051 (+) | 1338 | WP_116945277.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| CH611_RS02915 (CH611_02915) | - | 576064..576750 (+) | 687 | WP_005669238.1 | ComF family protein | - |
| CH611_RS02920 (CH611_02920) | nfuA | 576826..577422 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| CH611_RS02925 (CH611_02925) | nudC | 577489..578283 (+) | 795 | WP_105892388.1 | NAD(+) diphosphatase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19752.67 Da Isoelectric Point: 9.4939
>NTDB_id=310019 CH611_RS02895 WP_005656467.1 573270..573776(+) (comB) [Haemophilus influenzae strain P650-8603]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMRIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMRIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
Nucleotide
Download Length: 507 bp
>NTDB_id=310019 CH611_RS02895 WP_005656467.1 573270..573776(+) (comB) [Haemophilus influenzae strain P650-8603]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCGAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCGAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
98.81 |
100 |
0.988 |
| comB | Haemophilus influenzae Rd KW20 |
98.81 |
100 |
0.988 |