Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   CH613_RS00185 Genome accession   NZ_CP031684
Coordinates   39611..40285 (-) Length   224 a.a.
NCBI ID   WP_005647998.1    Uniprot ID   Q4QLV0
Organism   Haemophilus influenzae strain P652-8881     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 34611..45285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH613_RS00165 (CH613_00165) - 36315..36665 (+) 351 WP_005686227.1 HIT domain-containing protein -
  CH613_RS00170 (CH613_00170) - 36665..37015 (+) 351 WP_005686225.1 DUF1425 domain-containing protein -
  CH613_RS00175 (CH613_00175) nagZ 37019..38071 (+) 1053 WP_005686223.1 beta-N-acetylhexosaminidase -
  CH613_RS00180 (CH613_00180) rlmC 38068..39246 (+) 1179 WP_005686221.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -
  CH613_RS00185 (CH613_00185) crp 39611..40285 (-) 675 WP_005647998.1 cAMP-activated global transcriptional regulator CRP Regulator
  CH613_RS00190 (CH613_00190) - 40270..40521 (-) 252 WP_005647999.1 YheU family protein -
  CH613_RS00195 (CH613_00195) slmA 40543..41199 (-) 657 WP_005648000.1 nucleoid occlusion factor SlmA -
  CH613_RS00200 (CH613_00200) dut 41203..41658 (-) 456 WP_005631431.1 dUTP diphosphatase -
  CH613_RS00205 (CH613_00205) coaBC 41706..42908 (-) 1203 WP_012054541.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CH613_RS00210 (CH613_00210) radC 43072..43737 (+) 666 WP_041174703.1 DNA repair protein RadC -
  CH613_RS00215 (CH613_00215) rpmB 43950..44186 (+) 237 WP_005542826.1 50S ribosomal protein L28 -
  CH613_RS00220 (CH613_00220) rpmG 44198..44368 (+) 171 WP_005613503.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25151.85 Da        Isoelectric Point: 6.8375

>NTDB_id=309968 CH613_RS00185 WP_005647998.1 39611..40285(-) (crp) [Haemophilus influenzae strain P652-8881]
MSNELTEIDEVVTSSQEEATQRDPVLDWFLTHCHLHKYPAKSTLIHAGEDATTLYYVIKGSVMVSSKDDEGKEMILTYLG
AGQFFGEAGLFDEGSKRSAWVKTKTTCEIAEISYKKYRQLIQANPEILMFLTAQLARRLQNTSRQVTNLAFLDVAGRIAQ
TLMNLAKQPEAMTHPDGMQIKITRQEIGQMVGCSRETVGRIIKMLEDQNLIHAHGKTIVVYGAR

Nucleotide


Download         Length: 675 bp        

>NTDB_id=309968 CH613_RS00185 WP_005647998.1 39611..40285(-) (crp) [Haemophilus influenzae strain P652-8881]
ATGTCAAATGAATTAACCGAAATTGATGAAGTTGTAACCTCCTCTCAAGAAGAAGCAACTCAACGAGATCCCGTTTTAGA
TTGGTTTCTTACTCACTGCCATTTGCATAAGTATCCTGCAAAATCAACTTTAATTCATGCTGGGGAAGATGCGACCACGC
TGTATTACGTAATTAAAGGTTCTGTAATGGTATCTTCAAAAGATGATGAAGGCAAAGAGATGATCCTCACTTACTTAGGT
GCAGGACAATTTTTTGGCGAAGCGGGATTATTTGATGAAGGTTCAAAACGATCAGCTTGGGTAAAAACAAAAACAACATG
TGAAATTGCTGAAATTTCCTATAAGAAATATCGCCAGTTGATTCAGGCAAACCCTGAAATCTTAATGTTTCTCACTGCAC
AATTGGCAAGACGTTTGCAAAATACATCACGTCAAGTCACGAATTTGGCATTTTTAGACGTCGCAGGTCGCATCGCTCAA
ACTTTAATGAACTTAGCTAAACAGCCTGAAGCAATGACGCATCCTGATGGTATGCAAATCAAAATTACACGCCAAGAAAT
AGGGCAAATGGTGGGTTGTTCACGAGAAACTGTGGGGCGCATTATTAAGATGTTGGAGGATCAGAATCTTATCCACGCTC
ATGGAAAAACAATCGTTGTATATGGCGCAAGATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(36-124)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(156-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QLV0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Haemophilus influenzae Rd KW20

100

100

1
  crp Vibrio cholerae strain A1552

75.49

91.071

0.687
  crp Acinetobacter baumannii D1279779

48.705

86.161

0.42

Multiple sequence alignment