Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CH621_RS02995 Genome accession   NZ_CP031683
Coordinates   596698..597495 (+) Length   265 a.a.
NCBI ID   WP_105872257.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P662-7189     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 591698..602495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH621_RS02975 (CH621_02975) recR 591856..592458 (-) 603 WP_005626527.1 recombination mediator RecR -
  CH621_RS02980 (CH621_02980) - 592589..592918 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  CH621_RS02985 (CH621_02985) - 593087..593932 (-) 846 WP_011272052.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  CH621_RS02990 (CH621_02990) - 594005..596599 (-) 2595 WP_042593320.1 penicillin-binding protein 1A -
  CH621_RS02995 (CH621_02995) comA 596698..597495 (+) 798 WP_105872257.1 pilus assembly protein PilM Machinery gene
  CH621_RS03000 (CH621_03000) comB 597496..598002 (+) 507 WP_005656467.1 competence protein ComB Machinery gene
  CH621_RS03005 (CH621_03005) comC 597999..598520 (+) 522 WP_105872258.1 competence protein ComC Machinery gene
  CH621_RS03010 (CH621_03010) comD 598517..598930 (+) 414 WP_048951463.1 pilus assembly protein PilP Machinery gene
  CH621_RS03015 (CH621_03015) comE 598940..600277 (+) 1338 WP_105872259.1 type IV pilus secretin PilQ family protein Machinery gene
  CH621_RS03020 (CH621_03020) - 600290..600976 (+) 687 WP_005669238.1 ComF family protein -
  CH621_RS03025 (CH621_03025) nfuA 601052..601648 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31567.98 Da        Isoelectric Point: 6.0234

>NTDB_id=309947 CH621_RS02995 WP_105872257.1 596698..597495(+) (comA) [Haemophilus influenzae strain P662-7189]
MQFSLKNYRTLQIGIHRKQGYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSTAQTYLQDFQPFKINVLDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSYTPLLENWQRI
ETDLPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=309947 CH621_RS02995 WP_105872257.1 596698..597495(+) (comA) [Haemophilus influenzae strain P662-7189]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAACAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCATCAAATGCTGTTTTGCGTGCA
TTTCAATATCTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTTATACGCCATTACTAGAAAATTGGCAACGAATA
GAAACAGATTTACCCTTTATCGCGCTCGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

96.981

100

0.97
  comA Haemophilus influenzae 86-028NP

96.226

100

0.962

Multiple sequence alignment