Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   CH624_RS09670 Genome accession   NZ_CP031682
Coordinates   1891933..1892280 (-) Length   115 a.a.
NCBI ID   WP_162692267.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P665-7858     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1886933..1897280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH624_RS09645 (CH624_09640) otnI 1887400..1888176 (-) 777 WP_005647880.1 2-oxo-tetronate isomerase -
  CH624_RS09650 (CH624_09645) otnC 1888179..1888811 (-) 633 WP_005647883.1 3-oxo-tetronate 4-phosphate decarboxylase -
  CH624_RS09655 (CH624_09650) otnK 1888808..1890049 (-) 1242 WP_042611124.1 3-oxo-tetronate kinase -
  CH624_RS09660 (CH624_09655) ltnD 1890052..1890957 (-) 906 WP_015702001.1 L-threonate dehydrogenase -
  CH624_RS09665 (CH624_09660) - 1891128..1891886 (+) 759 WP_042611123.1 DeoR/GlpR family DNA-binding transcription regulator -
  CH624_RS09670 (CH624_09665) comE1/comEA 1891933..1892280 (-) 348 WP_162692267.1 helix-hairpin-helix domain-containing protein Machinery gene
  CH624_RS09675 (CH624_09670) ispH 1892449..1893393 (-) 945 WP_105899273.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  CH624_RS09680 (CH624_09675) lspA 1893390..1893905 (-) 516 WP_005651632.1 signal peptidase II -
  CH624_RS09685 (CH624_09680) - 1893975..1895534 (-) 1560 WP_042611119.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12392.27 Da        Isoelectric Point: 9.0266

>NTDB_id=309932 CH624_RS09670 WP_162692267.1 1891933..1892280(-) (comE1/comEA) [Haemophilus influenzae strain P665-7858]
MKLMKTLFTSVVLCGALVVSSSFAEEKATEQTAQPVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKAKLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=309932 CH624_RS09670 WP_162692267.1 1891933..1892280(-) (comE1/comEA) [Haemophilus influenzae strain P665-7858]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAACAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAAAACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

96.429

97.391

0.939
  comEA/comE1 Glaesserella parasuis strain SC1401

57.895

99.13

0.574
  comEA Vibrio campbellii strain DS40M4

38.393

97.391

0.374

Multiple sequence alignment