Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | CH631_RS02995 | Genome accession | NZ_CP031680 |
| Coordinates | 599918..600331 (+) | Length | 137 a.a. |
| NCBI ID | WP_116939824.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain P672-7661 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 594918..605331
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH631_RS02975 (CH631_02975) | - | 595406..598000 (-) | 2595 | WP_116939818.1 | penicillin-binding protein 1A | - |
| CH631_RS02980 (CH631_02980) | comA | 598099..598896 (+) | 798 | WP_116939820.1 | competence protein ComA | Machinery gene |
| CH631_RS02985 (CH631_02985) | comB | 598897..599403 (+) | 507 | WP_116939822.1 | competence protein ComB | Machinery gene |
| CH631_RS02990 (CH631_02990) | comC | 599400..599921 (+) | 522 | WP_112084028.1 | competence protein ComC | Machinery gene |
| CH631_RS02995 (CH631_02995) | comD | 599918..600331 (+) | 414 | WP_116939824.1 | pilus assembly protein PilP | Machinery gene |
| CH631_RS03000 (CH631_03000) | comE | 600341..601678 (+) | 1338 | WP_116939826.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| CH631_RS03005 (CH631_03005) | - | 601691..602377 (+) | 687 | WP_012055030.1 | ComF family protein | - |
| CH631_RS03010 (CH631_03010) | nfuA | 602453..603049 (+) | 597 | WP_116939827.1 | Fe-S biogenesis protein NfuA | - |
| CH631_RS03015 (CH631_03015) | nudC | 603116..603910 (+) | 795 | WP_116939829.1 | NAD(+) diphosphatase | - |
| CH631_RS03020 (CH631_03020) | - | 603946..604536 (+) | 591 | WP_116939830.1 | YjaG family protein | - |
| CH631_RS03025 (CH631_03025) | - | 604677..604949 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15603.69 Da Isoelectric Point: 4.5625
>NTDB_id=309847 CH631_RS02995 WP_116939824.1 599918..600331(+) (comD) [Haemophilus influenzae strain P672-7661]
MKHWFFLTALLFINCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKHWFFLTALLFINCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=309847 CH631_RS02995 WP_116939824.1 599918..600331(+) (comD) [Haemophilus influenzae strain P672-7661]
ATGAAACATTGGTTTTTCCTAACTGCATTGCTTTTTATAAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAAACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCGTTATTGCAGGATCAGGCTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAACATTGGTTTTTCCTAACTGCATTGCTTTTTATAAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAAACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCGTTATTGCAGGATCAGGCTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
96.35 |
100 |
0.964 |
| comD | Haemophilus influenzae Rd KW20 |
95.62 |
100 |
0.956 |