Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | CH635_RS02990 | Genome accession | NZ_CP031679 |
| Coordinates | 591549..591962 (+) | Length | 137 a.a. |
| NCBI ID | WP_070828390.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain P676-2514 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 586549..596962
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH635_RS02970 (CH635_02965) | - | 587030..589631 (-) | 2602 | Protein_552 | penicillin-binding protein 1A | - |
| CH635_RS02975 (CH635_02970) | comA | 589730..590527 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| CH635_RS02980 (CH635_02975) | comB | 590528..591034 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| CH635_RS02985 (CH635_02980) | comC | 591031..591552 (+) | 522 | WP_084999892.1 | competence protein ComC | Machinery gene |
| CH635_RS02990 (CH635_02985) | comD | 591549..591962 (+) | 414 | WP_070828390.1 | pilus assembly protein PilP | Machinery gene |
| CH635_RS02995 (CH635_02990) | comE | 591972..593309 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| CH635_RS03000 (CH635_02995) | - | 593322..594008 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| CH635_RS03005 (CH635_03000) | nfuA | 594084..594680 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| CH635_RS03010 (CH635_03005) | nudC | 594747..595541 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
| CH635_RS03015 (CH635_03010) | - | 595577..596167 (+) | 591 | WP_005686892.1 | YjaG family protein | - |
| CH635_RS03020 (CH635_03015) | - | 596307..596579 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15629.73 Da Isoelectric Point: 4.4355
>NTDB_id=309814 CH635_RS02990 WP_070828390.1 591549..591962(+) (comD) [Haemophilus influenzae strain P676-2514]
MKYWFFLTALLFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKYWFFLTALLFINCTWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGVDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=309814 CH635_RS02990 WP_070828390.1 591549..591962(+) (comD) [Haemophilus influenzae strain P676-2514]
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCACTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAGCAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCGTTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGTAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
95.62 |
100 |
0.956 |
| comD | Haemophilus influenzae Rd KW20 |
94.891 |
100 |
0.949 |