Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | CH635_RS02980 | Genome accession | NZ_CP031679 |
| Coordinates | 590528..591034 (+) | Length | 168 a.a. |
| NCBI ID | WP_011272049.1 | Uniprot ID | Q4QNA7 |
| Organism | Haemophilus influenzae strain P676-2514 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 585528..596034
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH635_RS02960 (CH635_02955) | - | 585627..585956 (-) | 330 | WP_005629464.1 | YbaB/EbfC family nucleoid-associated protein | - |
| CH635_RS02965 (CH635_02960) | - | 586108..586953 (-) | 846 | WP_084999896.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| CH635_RS02970 (CH635_02965) | - | 587030..589631 (-) | 2602 | Protein_552 | penicillin-binding protein 1A | - |
| CH635_RS02975 (CH635_02970) | comA | 589730..590527 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| CH635_RS02980 (CH635_02975) | comB | 590528..591034 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| CH635_RS02985 (CH635_02980) | comC | 591031..591552 (+) | 522 | WP_084999892.1 | competence protein ComC | Machinery gene |
| CH635_RS02990 (CH635_02985) | comD | 591549..591962 (+) | 414 | WP_070828390.1 | pilus assembly protein PilP | Machinery gene |
| CH635_RS02995 (CH635_02990) | comE | 591972..593309 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| CH635_RS03000 (CH635_02995) | - | 593322..594008 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| CH635_RS03005 (CH635_03000) | nfuA | 594084..594680 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| CH635_RS03010 (CH635_03005) | nudC | 594747..595541 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19697.54 Da Isoelectric Point: 7.4684
>NTDB_id=309812 CH635_RS02980 WP_011272049.1 590528..591034(+) (comB) [Haemophilus influenzae strain P676-2514]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQTSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQTSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
Nucleotide
Download Length: 507 bp
>NTDB_id=309812 CH635_RS02980 WP_011272049.1 590528..591034(+) (comB) [Haemophilus influenzae strain P676-2514]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAAGCGCAGCAAA
CATCTTTTGAACAACTTAATCAGCAACTTCACAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAAGCGCAGCAAA
CATCTTTTGAACAACTTAATCAGCAACTTCACAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comB | Haemophilus influenzae Rd KW20 |
98.81 |
100 |
0.988 |