Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   D7Y56_RS08065 Genome accession   NZ_CP038147
Coordinates   1469172..1471292 (-) Length   706 a.a.
NCBI ID   WP_014156878.1    Uniprot ID   A0ABZ1K183
Organism   Streptomyces sp. S501     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1464172..1476292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D7Y56_RS08045 (D7Y56_08045) - 1464372..1465028 (+) 657 WP_134664816.1 MBL fold metallo-hydrolase -
  D7Y56_RS08050 (D7Y56_08050) - 1465097..1466116 (-) 1020 WP_134664818.1 TerC family protein -
  D7Y56_RS08055 (D7Y56_08055) - 1466384..1468327 (-) 1944 WP_134664820.1 TerD family protein -
  D7Y56_RS08060 (D7Y56_08060) - 1468462..1469040 (-) 579 WP_014156879.1 TerD family protein -
  D7Y56_RS08065 (D7Y56_08065) uvrB 1469172..1471292 (-) 2121 WP_014156878.1 excinuclease ABC subunit UvrB Machinery gene
  D7Y56_RS08070 (D7Y56_08070) - 1471332..1472204 (-) 873 WP_134664822.1 MHYT domain-containing protein -
  D7Y56_RS08075 (D7Y56_08075) - 1472419..1473291 (+) 873 WP_134664824.1 glycerophosphodiester phosphodiesterase family protein -
  D7Y56_RS08080 (D7Y56_08080) - 1473340..1473885 (+) 546 WP_240798424.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  D7Y56_RS08085 (D7Y56_08085) - 1473986..1475254 (+) 1269 WP_134664828.1 MFS transporter -
  D7Y56_RS08090 (D7Y56_08090) - 1475369..1476010 (-) 642 WP_134664830.1 uridine kinase -

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 79322.00 Da        Isoelectric Point: 4.8822

>NTDB_id=309616 D7Y56_RS08065 WP_014156878.1 1469172..1471292(-) (uvrB) [Streptomyces sp. S501]
MRPVSKIERSVAPFEVVSPYQPSGDQPTAIAELDRRVRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVQLKVGDEVDRDQLLRRFVEIQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDTSLHVFPASHYVAGPERMEKAVTGIEKELEERLAELEKQGKMLEAQRLRMRTTYDIEMLRQIGTCSGVENYSMH
FDGRSPGTAPHTLLDYFPEDFLLVLDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFLGRINQTVYL
SATPGKYELSRGDGFVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRERTEKDERVLVTTLTKKMSEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRSGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKVTPAMAQAIDETNRRREKQIAYNTERGVDPQPLRKKINDIVASIAREEVDTEQLLGTGYRQAKDTKAPVPALGGKAG
AGAKAKKDGAVVTDRPATELAGIIEEMTDRMRAAAADLQFEVAARLRDEVGELKKELRQMREAGLA

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=309616 D7Y56_RS08065 WP_014156878.1 1469172..1471292(-) (uvrB) [Streptomyces sp. S501]
ATGCGGCCAGTCTCGAAGATCGAACGTTCGGTGGCGCCTTTCGAGGTCGTCAGTCCCTACCAGCCCAGCGGCGACCAGCC
CACGGCCATCGCCGAGCTGGACCGGCGCGTCCGCGCGGGTGAGAAGGACGTCGTCCTGCTCGGCGCGACGGGCACGGGCA
AGTCGGCGACGACCGCCTGGATGATCGAGAAGCTGCAGCGCCCCACCCTGGTGATGGCGCCGAACAAGACCCTGGCCGCC
CAGCTGGCCAACGAGTTCCGCGAGCTCCTCCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCCCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGGCTGCGGCACT
CCGCGACGAACTCGCTGCTCACCCGGCGGGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTGGGCACCCCG
CAGGAGTACGTGGACCGCATGGTCCAGCTCAAGGTCGGCGACGAGGTCGACCGTGACCAGCTGCTGCGCCGCTTCGTCGA
GATCCAGTACACCCGCAACGACCTCGCGTTCACCCGCGGGACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTCTCGACCCTCCACCCGCTCACCGGC
GAGGTCATCAGCGAGGACACCTCGCTCCACGTCTTCCCCGCCAGCCACTACGTGGCGGGCCCCGAGCGCATGGAGAAGGC
CGTCACCGGCATCGAGAAGGAGCTGGAGGAGCGCCTCGCCGAGCTGGAGAAGCAGGGCAAGATGCTGGAGGCCCAGCGAC
TGCGCATGCGCACCACGTACGACATCGAGATGCTCCGCCAGATCGGGACCTGCTCGGGCGTCGAGAACTACTCGATGCAC
TTCGACGGCCGCTCGCCCGGCACGGCCCCCCACACCCTCCTCGACTACTTCCCCGAGGACTTCCTCCTCGTCCTGGACGA
GTCGCACGTCACCGTCCCGCAGATCGGCGCGATGTACGAGGGCGACGCCTCCCGCAAGCGGACCCTCGTCGACCACGGCT
TCCGGCTGCCCTCGGCGCTGGACAACCGCCCGCTGAAGTGGGAGGAGTTCCTGGGCCGGATCAACCAGACGGTCTACCTC
TCCGCCACCCCCGGGAAGTACGAACTCTCCCGCGGCGACGGCTTCGTCGAGCAGATCATCCGGCCTACCGGTCTCGTCGA
CCCGGAGGTCGTCGTCAAGCCGACCGAGGGACAGATCGACGACCTCGTCCACGAGATCCGCGAGCGGACCGAGAAGGACG
AGCGCGTCCTGGTCACCACCCTCACCAAGAAGATGTCCGAGGACCTCACCGACTACTTCCTCGAGCTGGGCATCCAGGTC
CGGTACCTCCACAGCGACGTCGACACGCTGCGCCGTATCGAGCTTCTGCGCGAGCTGCGCTCCGGCGAGTACGACGTCCT
GGTGGGCATCAACCTCCTGCGTGAGGGTCTCGACCTGCCCGAGGTGTCACTCGTGGCGATCCTCGACGCGGACAAGCAGG
GCTTCCTGCGCTCCGGGACCTCGCTGATCCAGACCATCGGGCGTGCCGCCCGTAACGTCTCGGGCCAGGTCCACATGTAC
GCGGACAAGGTCACCCCCGCGATGGCACAGGCCATCGACGAGACCAACCGCCGTCGCGAGAAGCAGATCGCCTACAACAC
CGAGCGGGGCGTCGACCCGCAGCCGCTCCGCAAGAAGATCAATGACATCGTCGCGTCCATCGCCCGCGAGGAGGTCGACA
CCGAGCAGCTGCTCGGCACCGGCTACCGACAGGCCAAGGACACCAAGGCCCCCGTCCCCGCACTGGGCGGCAAGGCCGGC
GCGGGGGCCAAGGCGAAGAAGGACGGCGCGGTGGTCACCGACCGGCCCGCCACGGAGCTCGCGGGGATCATCGAGGAGAT
GACGGACCGCATGCGCGCGGCCGCCGCCGACCTGCAGTTCGAGGTGGCGGCCCGGCTGCGCGACGAGGTGGGCGAGCTGA
AGAAGGAACTGCGGCAGATGAGGGAGGCGGGGCTGGCCTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB interaction domain (UvrB_inter)

(168-257)

UvrB/uvrC motif (UVR)

(664-696)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

Type III restriction enzyme, res subunit (ResIII)

(25-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.934

97.025

0.552
  uvrB Streptococcus pneumoniae R6

56.934

97.025

0.552
  uvrB Streptococcus pneumoniae D39

56.934

97.025

0.552