Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   DY471_RS09620 Genome accession   NZ_CP031643
Coordinates   1843343..1844056 (-) Length   237 a.a.
NCBI ID   WP_071730199.1    Uniprot ID   -
Organism   Bacillus anthracis strain MCCC 1A01412     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1838343..1849056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DY471_RS09605 (DY471_09605) hitR 1840068..1840745 (+) 678 WP_071730347.1 envelope stress response regulator transcription factor HitR -
  DY471_RS09610 (DY471_09610) hitS 1840742..1841812 (+) 1071 WP_071730203.1 envelope stress sensor histidine kinase HitS -
  DY471_RS09615 (DY471_09615) - 1841930..1843342 (-) 1413 WP_071730201.1 HAMP domain-containing sensor histidine kinase -
  DY471_RS09620 (DY471_09620) scnR 1843343..1844056 (-) 714 WP_071730199.1 response regulator transcription factor Regulator
  DY471_RS09625 (DY471_09625) - 1844254..1844604 (-) 351 WP_071730198.1 YxeA family protein -
  DY471_RS09630 (DY471_09630) - 1844627..1845358 (-) 732 WP_071730197.1 ABC transporter permease -
  DY471_RS09635 (DY471_09635) - 1845371..1846123 (-) 753 WP_071730196.1 ABC transporter permease -
  DY471_RS09640 (DY471_09640) - 1846120..1847037 (-) 918 WP_071730194.1 ATP-binding cassette domain-containing protein -
  DY471_RS09645 (DY471_09645) - 1847508..1848227 (+) 720 WP_000818985.1 3-ketoacyl-ACP reductase -
  DY471_RS09650 (DY471_09650) - 1848377..1849049 (+) 673 Protein_1803 O-methyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26955.41 Da        Isoelectric Point: 6.4962

>NTDB_id=309336 DY471_RS09620 WP_071730199.1 1843343..1844056(-) (scnR) [Bacillus anthracis strain MCCC 1A01412]
MKNLKDKKILIVDDEREIRIMIEKLLRKEGFFRIYATGDCTSALSFCQTNNPDIAILDVMLPDGDGFSLLSSIRQFSTIP
VLFLSARGEDEDRLLGLGLGADDYLVKPFLPRELLLRLIAILKRVYSSSIADRLSTFKLGEQIVDLESAVVHREQKQIPL
TAKEHAILVKLYENQGRIITNDALCQAVWGDDSYGLENTLMVHIRRIREKIELDPSKPIHLLTFRGLGYKLLVKETD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=309336 DY471_RS09620 WP_071730199.1 1843343..1844056(-) (scnR) [Bacillus anthracis strain MCCC 1A01412]
ATGAAAAATTTAAAAGACAAAAAAATATTGATTGTAGATGATGAACGAGAAATCAGAATAATGATTGAAAAACTTTTGAG
AAAAGAGGGATTTTTTCGTATTTATGCTACTGGTGACTGTACCTCTGCTCTATCATTTTGCCAGACAAACAATCCAGATA
TTGCGATTCTAGATGTTATGTTACCTGATGGTGACGGATTTTCATTACTGTCTTCCATTAGGCAATTTTCGACTATACCA
GTTCTTTTTCTTTCCGCGCGGGGAGAAGATGAAGATCGATTGCTTGGATTGGGCTTGGGGGCAGATGATTACTTGGTAAA
ACCGTTTTTGCCACGTGAGTTGCTATTACGACTCATAGCGATTTTGAAGCGTGTATACTCCTCCTCAATCGCAGATCGTC
TATCTACCTTCAAATTAGGAGAACAAATTGTCGATCTCGAAAGCGCTGTTGTGCACAGAGAACAAAAACAAATTCCCTTG
ACTGCAAAGGAGCATGCCATTCTTGTAAAGCTCTATGAAAATCAAGGACGAATCATTACAAATGATGCCTTATGTCAAGC
GGTTTGGGGAGATGACAGCTACGGCCTTGAGAATACATTAATGGTTCATATCAGACGGATACGTGAAAAGATTGAACTGG
ATCCTTCCAAACCAATCCATCTCCTTACCTTCAGGGGACTAGGTTATAAATTACTAGTAAAGGAGACTGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

49.784

97.468

0.485
  micA Streptococcus pneumoniae Cp1015

40.435

97.046

0.392
  vicR Streptococcus mutans UA159

39.827

97.468

0.388

Multiple sequence alignment