Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   E3C75_RS02340 Genome accession   NZ_CP038020
Coordinates   432930..433520 (+) Length   196 a.a.
NCBI ID   WP_111679083.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ATCC 19258     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 427930..438520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3C75_RS02315 - 429058..429513 (-) 456 WP_084825708.1 DUF3021 domain-containing protein -
  E3C75_RS02320 brsR 429510..429947 (-) 438 WP_111679081.1 LytTR family DNA-binding domain-containing protein Regulator
  E3C75_RS02325 - 430126..430431 (+) 306 WP_084830425.1 hypothetical protein -
  E3C75_RS02330 hexB 430483..432426 (+) 1944 WP_011680601.1 DNA mismatch repair endonuclease MutL Machinery gene
  E3C75_RS02335 - 432557..432778 (+) 222 WP_011680602.1 hypothetical protein -
  E3C75_RS02340 ruvA 432930..433520 (+) 591 WP_111679083.1 Holliday junction branch migration protein RuvA Machinery gene
  E3C75_RS02345 - 433527..434081 (+) 555 WP_111679085.1 DNA-3-methyladenine glycosylase I -
  E3C75_RS02350 cinA 434177..435448 (+) 1272 WP_111679087.1 competence/damage-inducible protein A Machinery gene
  E3C75_RS02355 recA 435484..436623 (+) 1140 WP_011680606.1 recombinase RecA Machinery gene
  E3C75_RS02360 spx 436800..437198 (+) 399 WP_002949058.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21714.01 Da        Isoelectric Point: 5.2834

>NTDB_id=309203 E3C75_RS02340 WP_111679083.1 432930..433520(+) (ruvA) [Streptococcus thermophilus strain ATCC 19258]
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALL
ALGYKATELKKVKTFFEDTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=309203 E3C75_RS02340 WP_111679083.1 432930..433520(+) (ruvA) [Streptococcus thermophilus strain ATCC 19258]
ATGTATGATTATATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAGGGACTTGTTGCTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGGCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAGGAAATCAACAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAAGCCACAGAGCTTAAGAAAGTGAAAACCTTCTTTGAGGATACCAATGAAACGGCAGAGCAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.5

100

0.679
  ruvA Streptococcus pneumoniae R6

66.5

100

0.679
  ruvA Streptococcus pneumoniae D39

66.5

100

0.679
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.647

100

0.444

Multiple sequence alignment