Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   E1J56_RS01985 Genome accession   NZ_CP037910
Coordinates   431327..431959 (-) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain YSP8-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 426327..436959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1J56_RS01960 yhfG 426459..426626 (+) 168 WP_000736862.1 YhfG family protein -
  E1J56_RS01965 fic 426616..427218 (+) 603 WP_001280641.1 putative adenosine monophosphate-protein transferase Fic -
  E1J56_RS01970 pabA 427250..427813 (+) 564 WP_001753126.1 aminodeoxychorismate synthase component 2 -
  E1J56_RS01975 argD 427899..429119 (+) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  E1J56_RS01980 yhfK 429186..431276 (-) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  E1J56_RS01985 crp 431327..431959 (-) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  E1J56_RS01990 yhfA 432261..432665 (+) 405 WP_001148908.1 OsmC family protein -
  E1J56_RS01995 prkB 432720..433589 (-) 870 WP_001274680.1 phosphoribulokinase -
  E1J56_RS02000 yheU 433643..433861 (-) 219 WP_000907085.1 YheU family protein -
  E1J56_RS02005 yheT 433855..434877 (-) 1023 WP_001753125.1 hydrolase -
  E1J56_RS02010 yheS 434877..436790 (-) 1914 WP_000634798.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=308652 E1J56_RS01985 WP_000242755.1 431327..431959(-) (crp) [Escherichia coli strain YSP8-1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=308652 E1J56_RS01985 WP_000242755.1 431327..431959(-) (crp) [Escherichia coli strain YSP8-1]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment