Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   EZV63_RS07865 Genome accession   NZ_CP036534
Coordinates   1788949..1791105 (-) Length   718 a.a.
NCBI ID   WP_070387792.1    Uniprot ID   -
Organism   Streptomyces sp. VN1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1783949..1796105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EZV63_RS07850 (EZV63_07950) - 1784702..1785700 (-) 999 WP_031031261.1 TerC/Alx family metal homeostasis membrane protein -
  EZV63_RS07855 (EZV63_07955) - 1785956..1787983 (-) 2028 WP_070387791.1 TerD family protein -
  EZV63_RS07860 (EZV63_07960) - 1788229..1788807 (-) 579 WP_031031256.1 TerD family protein -
  EZV63_RS07865 (EZV63_07965) uvrB 1788949..1791105 (-) 2157 WP_070387792.1 excinuclease ABC subunit UvrB Machinery gene
  EZV63_RS07870 (EZV63_07970) - 1791146..1792024 (-) 879 WP_166623852.1 MHYT domain-containing protein -
  EZV63_RS07875 (EZV63_07975) - 1792317..1793186 (+) 870 WP_070387793.1 glycerophosphodiester phosphodiesterase family protein -
  EZV63_RS07880 (EZV63_07980) - 1793273..1793839 (+) 567 WP_166623853.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  EZV63_RS07885 (EZV63_07985) - 1793870..1794298 (-) 429 WP_166623854.1 VOC family protein -
  EZV63_RS07890 (EZV63_07990) - 1794437..1795345 (+) 909 WP_166623855.1 pseudouridine-5'-phosphate glycosidase -

Sequence

Protein


Download         Length: 718 a.a.        Molecular weight: 80608.10 Da        Isoelectric Point: 4.7255

>NTDB_id=308332 EZV63_RS07865 WP_070387792.1 1788949..1791105(-) (uvrB) [Streptomyces sp. VN1]
MRPVTQIERTVAPFEVVSPYQPNGDQPTAIAELARRVEAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSVNEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLRVGEEHDRDELLRRFVDIQYTRNDMAFSRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPVTG
EIISDDEQLYVFPASHYVAGPERLERAVNDIEKELAERLTELEKQGKLLEAQRLRMRTTYDIEMLRQIGSCSGVENYSMH
FDGRLPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGAYELSRSDGAVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMEKAIDETNRRREKQVAFNQANGVDPQPLRKKINDIVAQIAREDIDTEQLLGSGYRQAKDGKGAKAPVPALGG
RATADGEPARARRKGGGRAEETVPTDRPAAELAGQIEDLTTRMRAAAADLQFEIAARLRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2157 bp        

>NTDB_id=308332 EZV63_RS07865 WP_070387792.1 1788949..1791105(-) (uvrB) [Streptomyces sp. VN1]
ATGCGGCCCGTTACCCAGATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCGAACGGCGACCAGCC
GACGGCCATCGCCGAGCTGGCCCGGCGCGTCGAAGCAGGCGAGAAGGACGTCGTGCTGCTCGGCGCCACGGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGGCCCACCCTGGTCATGGCGCCGAACAAGACGCTGGCCGCC
CAGCTGGCCAACGAGTTCCGCGAGCTGCTGCCCAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCCTACGTCCCCCAGTCGGACACCTACATCGAGAAGGACTCCTCGGTCAACGAGGAGGTGGAGCGCCTGCGCCACT
CCGCGACCAACTCGCTGCTCACCCGCCGCGACGTCGTCGTGGTCGCCTCCGTCTCCTGTATCTACGGACTGGGCACCCCG
CAGGAGTACGTGGACCGCATGGTCCCGCTGCGGGTCGGCGAGGAGCACGACCGGGACGAGCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACATGGCCTTCAGCCGCGGCACCTTCCGCGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTCTCCACGCTCCACCCGGTCACCGGC
GAGATCATCAGCGACGACGAGCAGCTGTACGTCTTCCCGGCCTCCCACTACGTCGCGGGCCCCGAGCGCCTGGAGCGCGC
GGTCAACGACATCGAGAAGGAGCTTGCCGAGCGCCTGACCGAGCTGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGGC
TGCGGATGCGCACGACGTACGACATCGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGTGTGGAGAACTACTCGATGCAC
TTCGACGGCCGCTTGCCCGGCTCCCCGCCGAACACCCTGCTCGACTACTTCCCGGACGACTTCCTGCTGGTCATCGACGA
GTCGCACGTCACCGTGCCGCAGATCGGCGCTATGTACGAGGGCGATGCCTCCCGCAAGCGCACCCTGGTCGACCACGGTT
TCCGGCTGCCCTCCGCGCTCGACAACCGCCCGCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGGACAGACCGTGTACCTG
TCGGCGACCCCGGGCGCCTACGAGCTCTCCCGTTCCGACGGCGCCGTCGAGCAGATCATCCGCCCCACCGGCCTCGTCGA
CCCGGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTCGTGCACGAGATCCGCACGCGGACCGAGAAGGACG
AGCGCGTCCTGGTCACGACCCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAACTCGGCATCCAGGTC
CGCTACCTGCACAGCGACGTCGACACGCTGCGCCGCGTCGAACTGCTGAGAGAGCTGCGCGCCGGTGAGTACGACGTCCT
GGTCGGCATCAACCTGCTGCGTGAGGGCCTCGACCTCCCCGAGGTCTCCCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGCACCTCCCTGATCCAGACCATCGGCCGCGCCGCGCGCAACGTCTCCGGACAGGTCCACATGTAC
GCCGACAAGATCACGCCGGCGATGGAGAAGGCGATCGACGAGACCAACCGCCGTCGCGAGAAGCAGGTCGCGTTCAACCA
GGCCAACGGCGTCGACCCGCAGCCGCTGCGCAAGAAGATCAACGACATCGTCGCGCAGATCGCCCGCGAGGACATCGACA
CCGAGCAACTGCTCGGCTCGGGCTACCGCCAGGCGAAGGACGGCAAGGGCGCCAAGGCCCCCGTCCCCGCCCTCGGCGGC
CGGGCGACGGCCGACGGTGAGCCGGCCAGGGCCAGGCGGAAGGGCGGGGGCCGGGCCGAGGAGACGGTACCGACCGACCG
TCCCGCGGCGGAGCTCGCGGGGCAGATCGAGGACCTGACCACCCGCATGCGGGCGGCCGCCGCCGACCTCCAGTTCGAGA
TCGCGGCGCGACTGCGCGACGAGGTCTCCGAGATGAAGAAGGAACTGCGCCAGATGAAGGAGGCGGGCCTGGCCTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB/uvrC motif (UVR)

(675-707)

Type III restriction enzyme, res subunit (ResIII)

(22-128)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

UvrB interaction domain (UvrB_inter)

(169-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

62.732

82.591

0.518
  uvrB Streptococcus pneumoniae R6

62.732

82.591

0.518
  uvrB Streptococcus pneumoniae D39

62.732

82.591

0.518

Multiple sequence alignment