Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   AB849_RS04120 Genome accession   NZ_CP036487
Coordinates   780484..781857 (-) Length   457 a.a.
NCBI ID   WP_037996979.1    Uniprot ID   A0ABS0QJA3
Organism   Thermoactinomyces vulgaris strain CDF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 775484..786857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB849_RS04095 (AB849_004095) - 776167..777261 (-) 1095 WP_037996994.1 PIN/TRAM domain-containing protein -
  AB849_RS04100 (AB849_004100) - 777384..777881 (-) 498 WP_231564634.1 CarD family transcriptional regulator -
  AB849_RS04105 (AB849_004105) - 778154..778549 (+) 396 WP_037996988.1 hypothetical protein -
  AB849_RS04110 (AB849_004110) pssA 778597..779307 (-) 711 WP_037996982.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  AB849_RS04115 (AB849_004115) disA 779410..780438 (-) 1029 WP_049720835.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  AB849_RS04120 (AB849_004120) radA/sms 780484..781857 (-) 1374 WP_037996979.1 DNA repair protein RadA Machinery gene
  AB849_RS04125 (AB849_004125) clpC 782065..784512 (-) 2448 WP_049720819.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  AB849_RS04130 (AB849_004130) - 784545..785621 (-) 1077 WP_037996974.1 protein arginine kinase -
  AB849_RS04135 (AB849_004135) - 785634..786152 (-) 519 WP_049720818.1 UvrB/UvrC motif-containing protein -
  AB849_RS04140 (AB849_004140) - 786159..786629 (-) 471 WP_049720817.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49819.45 Da        Isoelectric Point: 6.2544

>NTDB_id=307884 AB849_RS04120 WP_037996979.1 780484..781857(-) (radA/sms) [Thermoactinomyces vulgaris strain CDF]
MAKKKTKFVCQECGYETPKWMGRCPGCHEWNTMVEELNSESSTVPGTGMHRKSKREKAIPITQVEKLDQPRSDTGIRELN
RVLGGGLVPGSFVLVGGDPGIGKSTLLLQATHELARRGLSVLYVSGEESAEQIRLRADRLDALSDRLLVVSETDLTAVEL
LMDEVRPKLMVIDSIQTMFHPDIASAPGSVAQVRECTGQLMRWAKEQNIAIIIVGHVTKSGSLAGPRMLEHMVDCVLYFE
GERHHTYRVLRAVKNRFGSTNEIGVFEMKEEGLAEVENPSELFLSGRPVGAPGTAVTASMEGTRPVLVELQALVAPTSFA
TPKRMAAGIDYNRVTMIMAVLEKRLGLFLQNYDAYINVVGGVRIDEPAVDLSVAVSLASSFRDVAVSPFDLFIGEVGLTG
EVRGVSRIEQRVAEAHNMGFKRVILPEKNCQGWTPPNGIGLIGVKTLEEALEVALGG

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=307884 AB849_RS04120 WP_037996979.1 780484..781857(-) (radA/sms) [Thermoactinomyces vulgaris strain CDF]
ATGGCGAAGAAAAAAACAAAGTTTGTTTGTCAGGAATGCGGCTATGAAACGCCGAAATGGATGGGCCGGTGCCCCGGCTG
TCATGAATGGAACACTATGGTGGAAGAGCTCAACAGCGAAAGTTCAACCGTTCCCGGTACCGGAATGCACAGAAAGAGCA
AACGGGAAAAAGCCATTCCGATTACGCAAGTGGAGAAGCTGGATCAGCCTCGTTCTGACACCGGGATCAGAGAGTTGAAC
CGGGTATTGGGCGGAGGATTGGTGCCGGGTTCTTTTGTTTTGGTGGGTGGAGATCCGGGAATCGGAAAGTCGACTCTGCT
TTTGCAGGCGACGCATGAACTGGCAAGGCGGGGATTGTCCGTTTTATACGTGTCAGGAGAAGAGTCCGCGGAACAGATCC
GGTTGCGTGCTGACCGGCTGGATGCTTTGAGCGACCGTTTGTTGGTGGTATCCGAAACGGATTTGACGGCCGTTGAATTG
TTGATGGACGAAGTGCGGCCGAAATTGATGGTGATCGACTCAATTCAAACCATGTTTCATCCGGATATTGCTTCAGCGCC
GGGAAGTGTCGCTCAGGTTCGCGAATGCACCGGACAATTGATGCGGTGGGCCAAGGAACAAAACATTGCGATCATCATCG
TGGGGCATGTGACCAAGTCGGGGTCGCTGGCCGGACCGAGGATGCTTGAACACATGGTTGACTGCGTTTTATATTTTGAG
GGGGAACGCCATCACACATACCGCGTTTTGCGTGCGGTCAAAAACCGCTTTGGTTCCACGAATGAAATAGGTGTTTTTGA
AATGAAGGAAGAAGGATTGGCGGAAGTCGAAAATCCTTCGGAGTTGTTTTTGTCGGGTCGTCCGGTGGGAGCGCCGGGGA
CGGCTGTGACGGCAAGTATGGAAGGAACCCGCCCGGTTTTGGTCGAATTGCAGGCATTGGTGGCTCCGACGAGTTTTGCC
ACCCCCAAACGGATGGCAGCCGGCATCGATTATAACCGGGTTACGATGATCATGGCGGTTTTGGAAAAGAGATTGGGGCT
TTTCTTGCAAAACTATGATGCTTATATCAACGTTGTAGGAGGCGTACGCATTGACGAACCGGCCGTTGATCTCAGTGTGG
CCGTCAGTCTGGCATCCAGTTTTCGGGACGTGGCCGTATCGCCGTTTGATTTGTTTATCGGTGAAGTGGGACTGACCGGG
GAAGTGAGAGGGGTCTCACGGATTGAACAACGCGTGGCCGAAGCGCATAACATGGGTTTTAAAAGAGTCATTCTCCCCGA
GAAAAATTGTCAGGGATGGACGCCTCCGAACGGGATCGGACTAATCGGGGTCAAAACGTTGGAAGAAGCATTAGAAGTGG
CGTTGGGAGGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

AAA domain (AAA_25)

(72-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

62.227

100

0.624
  radA Streptococcus mitis NCTC 12261

55.604

99.562

0.554
  radA Streptococcus mitis SK321

55.604

99.562

0.554
  radA Streptococcus pneumoniae Rx1

55.385

99.562

0.551
  radA Streptococcus pneumoniae D39

55.385

99.562

0.551
  radA Streptococcus pneumoniae R6

55.385

99.562

0.551
  radA Streptococcus pneumoniae TIGR4

55.385

99.562

0.551