Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   DYQ48_RS06560 Genome accession   NZ_CP031607
Coordinates   1508485..1508886 (+) Length   133 a.a.
NCBI ID   WP_023904776.1    Uniprot ID   A0AAU0BDV7
Organism   Xanthomonas hortorum strain VT106     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1503485..1513886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYQ48_RS06545 (DYQ48_06550) tsaB 1505038..1505760 (+) 723 WP_074058009.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  DYQ48_RS23570 - 1505912..1506105 (-) 194 Protein_1232 hypothetical protein -
  DYQ48_RS06550 (DYQ48_06555) - 1506426..1507301 (-) 876 WP_023904778.1 energy transducer TonB -
  DYQ48_RS06555 (DYQ48_06560) gshB 1507298..1508248 (-) 951 WP_074058008.1 glutathione synthase -
  DYQ48_RS06560 (DYQ48_06565) pilG 1508485..1508886 (+) 402 WP_023904776.1 twitching motility response regulator PilG Regulator
  DYQ48_RS06565 (DYQ48_06570) - 1508904..1509266 (+) 363 WP_006450735.1 response regulator -
  DYQ48_RS06570 (DYQ48_06575) - 1509266..1509796 (+) 531 WP_006450736.1 chemotaxis protein CheW -
  DYQ48_RS06575 (DYQ48_06580) - 1509836..1511872 (+) 2037 WP_095575225.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14690.07 Da        Isoelectric Point: 7.1350

>NTDB_id=307885 DYQ48_RS06560 WP_023904776.1 1508485..1508886(+) (pilG) [Xanthomonas hortorum strain VT106]
MSEHIAAGGELAGLKVMVIDDSKTIRRTAETLLKREGCEVVTATDGFEALAKIADQQPQIIFVDIMMPRLDGYQTCALIK
GNQLFKSTPVIMLSSKDGLFDKARGRIVGSEQYLTKPFTREELLSAIRTYVHA

Nucleotide


Download         Length: 402 bp        

>NTDB_id=307885 DYQ48_RS06560 WP_023904776.1 1508485..1508886(+) (pilG) [Xanthomonas hortorum strain VT106]
ATGAGTGAACACATTGCTGCGGGTGGGGAACTCGCAGGACTGAAGGTGATGGTCATCGACGATTCGAAGACTATTCGCCG
CACCGCCGAAACGCTGCTCAAGCGAGAAGGGTGTGAAGTAGTGACAGCAACGGATGGTTTCGAGGCACTGGCCAAAATTG
CGGACCAGCAACCTCAGATCATTTTTGTCGACATCATGATGCCGCGCCTGGATGGGTACCAGACGTGCGCGTTGATCAAG
GGCAACCAGCTCTTCAAGTCGACGCCGGTGATCATGTTGTCGTCCAAGGATGGCCTGTTCGACAAGGCACGCGGCCGCAT
CGTCGGCTCCGAGCAATATCTGACCAAGCCATTCACTCGTGAAGAACTACTGAGCGCGATTCGCACGTACGTCCACGCCT
GA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

75.207

90.977

0.684

Multiple sequence alignment