Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | DNJ55_RS01360 | Genome accession | NZ_CP031604 |
| Coordinates | 274408..274869 (+) | Length | 153 a.a. |
| NCBI ID | WP_037542875.1 | Uniprot ID | - |
| Organism | Staphylococcus pseudintermedius strain AI14 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 225385..279851 | 274408..274869 | within | 0 |
Gene organization within MGE regions
Location: 225385..279851
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DNJ55_RS01075 (DNJ55_01070) | - | 225529..226281 (+) | 753 | WP_014613779.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| DNJ55_RS01080 (DNJ55_01075) | mtaB | 226286..227635 (+) | 1350 | WP_015729250.1 | tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB | - |
| DNJ55_RS01085 (DNJ55_01080) | rpsU | 227844..228020 (+) | 177 | WP_002471046.1 | 30S ribosomal protein S21 | - |
| DNJ55_RS12990 | - | 228326..229339 (+) | 1014 | WP_265478592.1 | hypothetical protein | - |
| DNJ55_RS01095 (DNJ55_01090) | - | 229724..230374 (+) | 651 | WP_015729248.1 | NfeD family protein | - |
| DNJ55_RS01100 (DNJ55_01095) | floA | 230393..231388 (+) | 996 | WP_014613783.1 | flotillin-like protein FloA | - |
| DNJ55_RS01105 (DNJ55_01100) | - | 231402..232016 (+) | 615 | WP_014613784.1 | hypothetical protein | - |
| DNJ55_RS01110 (DNJ55_01105) | - | 232367..233311 (+) | 945 | WP_014613785.1 | PhoH family protein | - |
| DNJ55_RS01115 (DNJ55_01110) | ybeY | 233315..233776 (+) | 462 | WP_014613786.1 | rRNA maturation RNase YbeY | - |
| DNJ55_RS01120 (DNJ55_01115) | - | 233776..234123 (+) | 348 | WP_014613787.1 | diacylglycerol kinase family protein | - |
| DNJ55_RS01125 (DNJ55_01120) | cdd | 234139..234546 (+) | 408 | WP_014613788.1 | cytidine deaminase | - |
| DNJ55_RS01130 (DNJ55_01125) | era | 234543..235439 (+) | 897 | WP_014613789.1 | GTPase Era | - |
| DNJ55_RS01135 (DNJ55_01130) | recO | 235464..236234 (+) | 771 | WP_096538131.1 | DNA repair protein RecO | - |
| DNJ55_RS01140 (DNJ55_01135) | - | 236450..237844 (-) | 1395 | WP_015729245.1 | glycine--tRNA ligase | - |
| DNJ55_RS01145 (DNJ55_01140) | - | 238339..238959 (+) | 621 | WP_075773659.1 | helix-turn-helix transcriptional regulator | - |
| DNJ55_RS01150 (DNJ55_01145) | - | 238974..239801 (+) | 828 | WP_014613793.1 | pyruvate, water dikinase regulatory protein | - |
| DNJ55_RS01155 (DNJ55_01150) | dnaG | 239874..241661 (+) | 1788 | WP_014613794.1 | DNA primase | - |
| DNJ55_RS01160 (DNJ55_01155) | rpoD | 241679..242788 (+) | 1110 | WP_014613795.1 | RNA polymerase sigma factor RpoD | - |
| DNJ55_RS01165 (DNJ55_01160) | - | 243306..243983 (+) | 678 | WP_096538134.1 | tRNA (adenine(22)-N(1))-methyltransferase | - |
| DNJ55_RS01170 (DNJ55_01165) | - | 243980..245083 (+) | 1104 | WP_037542857.1 | Nif3-like dinuclear metal center hexameric protein | - |
| DNJ55_RS01175 (DNJ55_01170) | - | 245237..246205 (-) | 969 | WP_015729241.1 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | - |
| DNJ55_RS01180 (DNJ55_01175) | - | 246386..247720 (+) | 1335 | WP_014613799.1 | DEAD/DEAH box helicase | - |
| DNJ55_RS01185 (DNJ55_01180) | - | 247746..248639 (+) | 894 | WP_015729240.1 | deoxyribonuclease IV | - |
| DNJ55_RS01190 (DNJ55_01185) | - | 248824..249594 (+) | 771 | WP_014613801.1 | metal ABC transporter ATP-binding protein | - |
| DNJ55_RS01195 (DNJ55_01190) | - | 249591..250478 (+) | 888 | WP_014613802.1 | metal ABC transporter permease | - |
| DNJ55_RS01200 (DNJ55_01195) | - | 250441..250848 (+) | 408 | WP_014613803.1 | Fur family transcriptional regulator | - |
| DNJ55_RS01205 (DNJ55_01200) | ispG | 251122..252228 (-) | 1107 | WP_014613804.1 | flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase | - |
| DNJ55_RS01210 (DNJ55_01205) | - | 252575..253174 (+) | 600 | WP_014613806.1 | superoxide dismutase | - |
| DNJ55_RS01215 (DNJ55_01210) | - | 253467..255506 (+) | 2040 | WP_096538136.1 | peptidoglycan D,D-transpeptidase FtsI family protein | - |
| DNJ55_RS01220 (DNJ55_01215) | - | 255775..256734 (+) | 960 | WP_015729236.1 | PstS family phosphate ABC transporter substrate-binding protein | - |
| DNJ55_RS01225 (DNJ55_01220) | pstC | 256852..257778 (+) | 927 | WP_096538138.1 | phosphate ABC transporter permease subunit PstC | - |
| DNJ55_RS01230 (DNJ55_01225) | pstA | 257778..258659 (+) | 882 | WP_172426176.1 | phosphate ABC transporter permease PstA | - |
| DNJ55_RS01235 (DNJ55_01230) | pstB | 258677..259519 (+) | 843 | WP_014613811.1 | phosphate ABC transporter ATP-binding protein PstB | - |
| DNJ55_RS01240 (DNJ55_01235) | phoU | 259521..260171 (+) | 651 | WP_014613812.1 | phosphate signaling complex protein PhoU | - |
| DNJ55_RS01245 (DNJ55_01240) | rpmG | 260243..260392 (+) | 150 | WP_014613813.1 | 50S ribosomal protein L33 | - |
| DNJ55_RS01250 (DNJ55_01245) | - | 260544..261083 (+) | 540 | WP_014613814.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| DNJ55_RS01255 (DNJ55_01250) | - | 261102..262541 (+) | 1440 | WP_100007251.1 | rhomboid family intramembrane serine protease | - |
| DNJ55_RS01260 (DNJ55_01255) | - | 262543..262746 (+) | 204 | WP_014613816.1 | YqgQ family protein | - |
| DNJ55_RS01265 (DNJ55_01260) | - | 262743..263729 (+) | 987 | WP_014613817.1 | ROK family glucokinase | - |
| DNJ55_RS01270 (DNJ55_01265) | - | 263730..264041 (+) | 312 | WP_014613818.1 | MTH1187 family thiamine-binding protein | - |
| DNJ55_RS01275 (DNJ55_01270) | - | 264054..264683 (+) | 630 | WP_037542865.1 | MBL fold metallo-hydrolase | - |
| DNJ55_RS01280 (DNJ55_01275) | - | 264844..265353 (+) | 510 | Protein_256 | ATPase, T2SS/T4P/T4SS family | - |
| DNJ55_RS01285 (DNJ55_01280) | - | 265441..266664 (-) | 1224 | WP_037542866.1 | tyrosine-type recombinase/integrase | - |
| DNJ55_RS01290 (DNJ55_01285) | - | 266725..267336 (-) | 612 | WP_100006941.1 | hypothetical protein | - |
| DNJ55_RS01295 (DNJ55_01290) | - | 267383..267844 (-) | 462 | WP_015729225.1 | ImmA/IrrE family metallo-endopeptidase | - |
| DNJ55_RS01300 (DNJ55_01295) | - | 267858..268169 (-) | 312 | WP_015729224.1 | helix-turn-helix domain-containing protein | - |
| DNJ55_RS01305 (DNJ55_01300) | - | 268345..268572 (+) | 228 | WP_015729223.1 | hypothetical protein | - |
| DNJ55_RS01310 (DNJ55_01305) | - | 268769..268951 (+) | 183 | WP_015729222.1 | hypothetical protein | - |
| DNJ55_RS01315 (DNJ55_01310) | - | 268975..269466 (-) | 492 | WP_037544203.1 | hypothetical protein | - |
| DNJ55_RS01320 (DNJ55_01315) | - | 269528..269791 (+) | 264 | WP_103866755.1 | helix-turn-helix domain-containing protein | - |
| DNJ55_RS01325 | - | 269806..269982 (+) | 177 | WP_168434018.1 | hypothetical protein | - |
| DNJ55_RS01330 (DNJ55_01320) | - | 269984..270280 (+) | 297 | WP_103866757.1 | DUF2482 family protein | - |
| DNJ55_RS01335 (DNJ55_01325) | - | 270367..270624 (+) | 258 | WP_103866759.1 | DUF1108 family protein | - |
| DNJ55_RS01340 (DNJ55_01330) | - | 270640..272586 (+) | 1947 | WP_190001148.1 | AAA family ATPase | - |
| DNJ55_RS13440 (DNJ55_01335) | - | 272625..272780 (+) | 156 | WP_420903256.1 | helix-turn-helix domain-containing protein | - |
| DNJ55_RS01350 (DNJ55_01340) | - | 272794..273708 (+) | 915 | WP_037542874.1 | RecT family recombinase | - |
| DNJ55_RS01355 (DNJ55_01345) | - | 273771..274415 (+) | 645 | WP_081378287.1 | MBL fold metallo-hydrolase | - |
| DNJ55_RS01360 (DNJ55_01350) | ssb | 274408..274869 (+) | 462 | WP_037542875.1 | single-stranded DNA-binding protein | Machinery gene |
| DNJ55_RS01365 (DNJ55_01355) | - | 274884..275291 (+) | 408 | WP_037542877.1 | hypothetical protein | - |
| DNJ55_RS01370 (DNJ55_01360) | - | 275307..276026 (+) | 720 | WP_103866762.1 | hypothetical protein | - |
| DNJ55_RS01375 (DNJ55_01365) | - | 276078..276842 (+) | 765 | WP_190001149.1 | DnaD domain-containing protein | - |
| DNJ55_RS01380 (DNJ55_01370) | - | 276857..277639 (+) | 783 | WP_103866766.1 | ATP-binding protein | - |
| DNJ55_RS12995 | - | 277636..277803 (+) | 168 | WP_233510688.1 | hypothetical protein | - |
| DNJ55_RS01385 (DNJ55_01380) | - | 278156..278407 (+) | 252 | WP_103866770.1 | hypothetical protein | - |
| DNJ55_RS01390 (DNJ55_01385) | - | 278440..278661 (+) | 222 | WP_234985416.1 | SAV1978 family virulence-associated passenger protein | - |
| DNJ55_RS01395 (DNJ55_01390) | - | 278639..278824 (+) | 186 | WP_103866772.1 | hypothetical protein | - |
| DNJ55_RS01400 (DNJ55_01395) | - | 278821..279171 (+) | 351 | WP_103866774.1 | YopX family protein | - |
| DNJ55_RS01405 (DNJ55_01400) | - | 279171..279566 (+) | 396 | WP_096636854.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 153 a.a. Molecular weight: 16792.71 Da Isoelectric Point: 7.1063
>NTDB_id=307816 DNJ55_RS01360 WP_037542875.1 274408..274869(+) (ssb) [Staphylococcus pseudintermedius strain AI14]
MINRVVLVGRLTKNPELRHTQSGTSVCSFTLAVNRTFTNAQGEREADFINCIALKKTAENIINYLSKGSLAGVDGRLKSR
SYENKEGQRVYVTEVICDSVQFLESKSTNSNQSQGGIASGQYQPKANHVAATSQNPFVNMNDSIDISDDDLPF
MINRVVLVGRLTKNPELRHTQSGTSVCSFTLAVNRTFTNAQGEREADFINCIALKKTAENIINYLSKGSLAGVDGRLKSR
SYENKEGQRVYVTEVICDSVQFLESKSTNSNQSQGGIASGQYQPKANHVAATSQNPFVNMNDSIDISDDDLPF
Nucleotide
Download Length: 462 bp
>NTDB_id=307816 DNJ55_RS01360 WP_037542875.1 274408..274869(+) (ssb) [Staphylococcus pseudintermedius strain AI14]
ATGATTAATAGAGTTGTACTTGTAGGTCGATTAACTAAAAATCCTGAATTAAGACATACACAAAGCGGTACAAGTGTTTG
TAGTTTCACGCTTGCTGTAAATCGTACATTTACGAATGCGCAAGGGGAGCGTGAAGCGGATTTCATTAACTGTATTGCTT
TAAAAAAAACAGCAGAGAACATTATTAACTATTTGTCAAAAGGAAGTTTAGCAGGCGTTGATGGTCGTTTAAAATCACGC
AGTTACGAAAACAAAGAGGGACAACGCGTATATGTCACTGAGGTGATATGTGACAGTGTTCAGTTTCTTGAAAGCAAATC
TACTAATAGCAATCAATCACAAGGCGGTATAGCATCCGGACAATATCAACCAAAAGCAAATCATGTCGCTGCTACAAGTC
AAAATCCATTTGTTAATATGAATGATTCAATTGATATTAGTGACGACGATTTACCATTCTAA
ATGATTAATAGAGTTGTACTTGTAGGTCGATTAACTAAAAATCCTGAATTAAGACATACACAAAGCGGTACAAGTGTTTG
TAGTTTCACGCTTGCTGTAAATCGTACATTTACGAATGCGCAAGGGGAGCGTGAAGCGGATTTCATTAACTGTATTGCTT
TAAAAAAAACAGCAGAGAACATTATTAACTATTTGTCAAAAGGAAGTTTAGCAGGCGTTGATGGTCGTTTAAAATCACGC
AGTTACGAAAACAAAGAGGGACAACGCGTATATGTCACTGAGGTGATATGTGACAGTGTTCAGTTTCTTGAAAGCAAATC
TACTAATAGCAATCAATCACAAGGCGGTATAGCATCCGGACAATATCAACCAAAAGCAAATCATGTCGCTGCTACAAGTC
AAAATCCATTTGTTAATATGAATGATTCAATTGATATTAGTGACGACGATTTACCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
55.882 |
100 |
0.621 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
52.907 |
100 |
0.595 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
69.281 |
0.412 |