Detailed information    

insolico Bioinformatically predicted

Overview


Name   agrA   Type   Regulator
Locus tag   DNI27_RS09170 Genome accession   NZ_CP031603
Coordinates   1992529..1993245 (-) Length   238 a.a.
NCBI ID   WP_096533945.1    Uniprot ID   X2JBZ6
Organism   Staphylococcus pseudintermedius strain AK9     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 1987529..1998245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNI27_RS09155 (DNI27_09315) - 1989034..1989981 (+) 948 WP_020220433.1 LacI family DNA-binding transcriptional regulator -
  DNI27_RS09160 (DNI27_09320) - 1990037..1991521 (+) 1485 WP_020220432.1 sucrose-6-phosphate hydrolase -
  DNI27_RS09165 (DNI27_09325) - 1991525..1992469 (+) 945 WP_020220431.1 carbohydrate kinase -
  DNI27_RS09170 (DNI27_09330) agrA 1992529..1993245 (-) 717 WP_096533945.1 quorum-sensing response regulator AgrA Regulator
  DNI27_RS09175 (DNI27_09335) agrC 1993259..1994551 (-) 1293 WP_096533946.1 quorum-sensing sensor histidine kinase AgrC -
  DNI27_RS09180 (DNI27_09340) agrD 1994574..1994711 (-) 138 WP_019166405.1 cyclic lactone autoinducer peptide AgrD -
  DNI27_RS09185 (DNI27_09345) - 1994713..1995279 (-) 567 WP_096533948.1 accessory gene regulator AgrB -
  DNI27_RS14000 (DNI27_09350) - 1995671..1995748 (+) 78 WP_126511050.1 delta-lysin family phenol-soluble modulin -
  DNI27_RS09195 (DNI27_09355) - 1996036..1996839 (-) 804 WP_096533951.1 carbon-nitrogen family hydrolase -
  DNI27_RS13680 - 1997004..1997873 (+) 870 WP_234985398.1 hypothetical protein -

Sequence


Protein


Download         Length: 238 a.a.        Molecular weight: 28017.12 Da        Isoelectric Point: 5.0936

>NTDB_id=307794 DNI27_RS09170 WP_096533945.1 1992529..1993245(-) (agrA) [Staphylococcus pseudintermedius strain AK9]
MKILICEDDPKQRERMVSIIENYIMIEEKPMEIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=307794 DNI27_RS09170 WP_096533945.1 1992529..1993245(-) (agrA) [Staphylococcus pseudintermedius strain AK9]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGCATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGGAAATTGAGCTTGCTACCAATGACCCTTATGCTATTTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGAACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTGT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACAAGCTCAGTTTACGTGAACTATGACGACGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGAGCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB X2JBZ6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.193

100

0.832


Multiple sequence alignment