Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DNI88_RS11510 Genome accession   NZ_CP031561
Coordinates   2362802..2363308 (-) Length   168 a.a.
NCBI ID   WP_014614920.1    Uniprot ID   A0A161W350
Organism   Staphylococcus pseudintermedius strain AP20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2357802..2368308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DNI88_RS11485 (DNI88_11545) - 2358308..2359135 (-) 828 WP_063278723.1 carbohydrate ABC transporter permease -
  DNI88_RS11490 (DNI88_11550) - 2359137..2360036 (-) 900 WP_063278722.1 carbohydrate ABC transporter permease -
  DNI88_RS11495 (DNI88_11555) - 2360046..2361371 (-) 1326 WP_096533760.1 ABC transporter substrate-binding protein -
  DNI88_RS11500 (DNI88_11560) - 2361475..2362305 (-) 831 WP_070407296.1 AraC family transcriptional regulator -
  DNI88_RS11505 (DNI88_11565) rpsR 2362506..2362748 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  DNI88_RS11510 (DNI88_11570) ssbA 2362802..2363308 (-) 507 WP_014614920.1 single-stranded DNA-binding protein Machinery gene
  DNI88_RS11515 (DNI88_11575) rpsF 2363331..2363627 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  DNI88_RS11520 (DNI88_11580) sbi 2363964..2365460 (+) 1497 WP_168250274.1 Ig-binding surface protein Sbi/SpsK -
  DNI88_RS11525 (DNI88_11585) - 2365514..2366323 (-) 810 WP_037541946.1 ABC transporter permease subunit -
  DNI88_RS11530 (DNI88_11590) - 2366316..2367251 (-) 936 WP_168250276.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18738.42 Da        Isoelectric Point: 5.1957

>NTDB_id=307672 DNI88_RS11510 WP_014614920.1 2362802..2363308(-) (ssbA) [Staphylococcus pseudintermedius strain AP20]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNHQQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=307672 DNI88_RS11510 WP_014614920.1 2362802..2363308(-) (ssbA) [Staphylococcus pseudintermedius strain AP20]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGCGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAACTTTTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAATCAAAACCAAGGCAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATCATCAGCAACCAGCTAACGATAATCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A161W350

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.14

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381

Multiple sequence alignment