Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   DV947_RS06685 Genome accession   NZ_CP031545
Coordinates   1261174..1262667 (-) Length   497 a.a.
NCBI ID   WP_011227407.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain ST109     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1256174..1267667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV947_RS06655 (DV947_06660) - 1256304..1256681 (+) 378 WP_011681413.1 GntR family transcriptional regulator -
  DV947_RS06660 (DV947_06665) - 1256686..1257384 (+) 699 WP_011226301.1 ABC transporter ATP-binding protein -
  DV947_RS06665 (DV947_06670) - 1257396..1258181 (+) 786 WP_002951425.1 hypothetical protein -
  DV947_RS06670 (DV947_06675) amiF 1258231..1259160 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein Regulator
  DV947_RS06675 (DV947_06680) amiE 1259153..1260238 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  DV947_RS06680 (DV947_06685) amiD 1260248..1261174 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  DV947_RS06685 (DV947_06690) amiC 1261174..1262667 (-) 1494 WP_011227407.1 ABC transporter permease Regulator
  DV947_RS06690 (DV947_06695) amiA 1262729..1264696 (-) 1968 WP_116920313.1 peptide ABC transporter substrate-binding protein Regulator
  DV947_RS06695 (DV947_06700) - 1265052..1266229 (+) 1178 Protein_1237 ISL3 family transposase -
  DV947_RS06700 (DV947_06705) - 1266354..1267603 (+) 1250 Protein_1238 ISL3 family transposase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55721.59 Da        Isoelectric Point: 10.0618

>NTDB_id=307426 DV947_RS06685 WP_011227407.1 1261174..1262667(-) (amiC) [Streptococcus thermophilus strain ST109]
MKKYILLRTLRSLLSIFVVTALTYTIIYTMVPRRLIFRQDPNYNKIAKTADSKANYENTIYERLGYIDYYDTKELQEKAS
SLDKSVTTKPTKENKAIYQKYVDSLGRGWRLHQFKQSKQFYATRDVPVLERVFGFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNGQFPFVHQNFVKMNLGTSYPTYAEQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGNDPYTATKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMALFKNTIFDSVSTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=307426 DV947_RS06685 WP_011227407.1 1261174..1262667(-) (amiC) [Streptococcus thermophilus strain ST109]
ATGAAAAAATACATTTTATTGAGAACACTCCGTTCTCTATTGTCAATATTTGTCGTGACGGCTTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCGTCTGATTTTCAGACAAGACCCGAACTACAACAAGATTGCTAAGACAGCTGATTCTAAGG
CTAACTATGAAAATACAATCTATGAACGCTTGGGTTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAAAGCTAGC
TCCCTTGATAAGTCAGTAACCACTAAGCCAACAAAAGAAAATAAGGCTATCTACCAAAAATATGTGGATAGTTTAGGACG
TGGTTGGCGTTTGCATCAGTTCAAGCAAAGTAAACAATTCTATGCGACACGTGATGTGCCAGTGCTTGAACGTGTGTTTG
GCTTCTATACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTATATC
CGTATTGAAAATGACCCAGCTATCGGTTGGTCAGTTGTTGGTTCAGGGACTAAGCATAAATATTTGCTTTACTTTAATGG
TCAGTTCCCATTTGTTCACCAAAACTTTGTGAAGATGAACCTTGGTACATCTTACCCAACTTATGCTGAGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCAAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGAAATGATCCATACAC
AGCTACCAAGAGTCGTTATCAATACCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTGGCAATTCCATTGGGATCATACATGGCACTCTTTAAAAACACAATCTTTGATAGTGTGTCAACAGGTGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGTTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMG 18311

99.799

100

0.998
  amiC Streptococcus thermophilus LMD-9

99.396

100

0.994
  amiC Streptococcus salivarius strain HSISS4

97.183

100

0.972

Multiple sequence alignment