Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACICU_RS16850 Genome accession   NC_010611
Coordinates   3570911..3571729 (-) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii ACICU     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3565911..3576729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACICU_RS16835 (ACICU_03364) pilE 3566128..3566553 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  ACICU_RS16840 (ACICU_03365) pilY2 3566550..3567032 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  ACICU_RS16845 (ACICU_03366) pilY1 3567045..3570899 (-) 3855 WP_000768964.1 PilC/PilY family type IV pilus protein Machinery gene
  ACICU_RS16850 (ACICU_03367) pilX 3570911..3571729 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACICU_RS16855 (ACICU_03368) pilW 3571726..3572727 (-) 1002 WP_000079192.1 PilW family protein Machinery gene
  ACICU_RS16860 (ACICU_03369) pilV 3572728..3573288 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  ACICU_RS16865 (ACICU_03370) fimU 3573282..3573755 (-) 474 WP_001214067.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACICU_RS16870 (ACICU_03371) ispH 3573925..3574875 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACICU_RS16875 (ACICU_03372) gmk 3574998..3575627 (+) 630 WP_000015937.1 guanylate kinase -
  ACICU_RS16880 (ACICU_03373) rpoZ 3575700..3575978 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  ACICU_RS19705 - 3576017..3576147 (+) 131 Protein_3340 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=30741 ACICU_RS16850 WP_000149377.1 3570911..3571729(-) (pilX) [Acinetobacter baumannii ACICU]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=30741 ACICU_RS16850 WP_000149377.1 3570911..3571729(-) (pilX) [Acinetobacter baumannii ACICU]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTAGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment