Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   ACICU_RS16835 Genome accession   NC_010611
Coordinates   3566128..3566553 (-) Length   141 a.a.
NCBI ID   WP_000788342.1    Uniprot ID   N9K1U0
Organism   Acinetobacter baumannii ACICU     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3561128..3571553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACICU_RS16805 (ACICU_03358) - 3561656..3562690 (+) 1035 WP_012391995.1 lipase secretion chaperone -
  ACICU_RS16810 (ACICU_03359) - 3562805..3563746 (+) 942 WP_085916958.1 triacylglycerol lipase -
  ACICU_RS16815 (ACICU_03360) rplS 3563799..3564167 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  ACICU_RS16820 (ACICU_03361) trmD 3564376..3565116 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  ACICU_RS16825 (ACICU_03362) rimM 3565162..3565710 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  ACICU_RS16830 (ACICU_03363) rpsP 3565730..3565981 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  ACICU_RS16835 (ACICU_03364) pilE 3566128..3566553 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  ACICU_RS16840 (ACICU_03365) pilY2 3566550..3567032 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  ACICU_RS16845 (ACICU_03366) pilY1 3567045..3570899 (-) 3855 WP_000768964.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15214.45 Da        Isoelectric Point: 7.8464

>NTDB_id=30738 ACICU_RS16835 WP_000788342.1 3566128..3566553(-) (pilE) [Acinetobacter baumannii ACICU]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=30738 ACICU_RS16835 WP_000788342.1 3566128..3566553(-) (pilE) [Acinetobacter baumannii ACICU]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1U0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

92.199

100

0.922
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518

Multiple sequence alignment