Detailed information NTG0307240

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: DXT74_RS03070
• Genome accession: NZ_CP031514
• Coordinates: 670699..672030 (+)
• Length: 443 a.a.
• NCBI ID: WP_043636466.1
• Uniprot ID: -
• Organism: Chromobacterium sp. Rain0013
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 665699..677030

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DXT74_RS03055 (DXT74_03045)	-	666153..666620 (-)	468	WP_081556664.1	GNAT family N-acetyltransferase	-
DXT74_RS03060 (DXT74_03050)	parC	666787..669156 (+)	2370	WP_081556665.1	DNA topoisomerase IV subunit A	-
DXT74_RS03065 (DXT74_03055)	-	669153..670706 (+)	1554	WP_081556666.1	PAS domain-containing sensor histidine kinase	-
DXT74_RS03070 (DXT74_03060)	pilR	670699..672030 (+)	1332	WP_043636466.1	sigma-54 dependent transcriptional regulator	Regulator
DXT74_RS03075 (DXT74_03065)	-	672421..673179 (+)	759	WP_052370474.1	ABC transporter substrate-binding protein	-
DXT74_RS03080 (DXT74_03070)	-	673491..673706 (+)	216	WP_043593468.1	YdcH family protein	-
DXT74_RS03085 (DXT74_03075)	-	673920..674213 (-)	294	WP_081556668.1	hypothetical protein	-
DXT74_RS03090 (DXT74_03080)	alr	674331..675560 (-)	1230	WP_194427302.1	alanine racemase	-
DXT74_RS03095 (DXT74_03085)	-	675897..676712 (+)	816	WP_043636630.1	transporter substrate-binding domain-containing protein	-

Sequence

Protein

• Length: 443 a.a.
• Molecular weight: 48890.98 Da
• Isoelectric Point: 5.4355

>NTDB_id=307240 DXT74_RS03070 WP_043636466.1 670699..672030(+) (pilR) [Chromobacterium sp. Rain0013]
MAKSSLRVLVIDDEPDIRELLELTLIKMGLDVATAASVGAAKLSLNSQPFDLALTDMRLPDGEGIEVVRHIAEQGLDVPI
AVITAYGNTDNAVLAMKAGAFDYLQKPVSLAQLRSLVKSVLRVDNGKTEAAVRLDGESPAIQEALRLIGKLARSQAAVYV
SGESGTGKEQAARMIHEHSARAERPFIPVNCGAIPETLMESEFFGYRKGAFTGADNDRDGFFQQANGGTLFLDEVADLPL
AMQVKLLRAIQEKKVRRLGNAQEEAVDVRIICATHKDLAARVDAGNFRQDLYYRLNVLPLRMPPLRELREDLPRYIASLL
ERFSPDEKPRLAPAALKALLEYNYPGNFRELENILERAVALANDARIELRDLQLLPSDHGGQGDGEAPTCADGEALQDFL
DRVEREAILKALESTRFNRTQAAKTLGVTFRSMRYRMERLGIK

Nucleotide

• Length: 1332 bp

>NTDB_id=307240 DXT74_RS03070 WP_043636466.1 670699..672030(+) (pilR) [Chromobacterium sp. Rain0013]
ATGGCTAAATCCTCCCTGCGCGTGCTGGTGATCGACGATGAACCGGACATCCGCGAACTGCTGGAACTGACCCTGATCAA
GATGGGGCTGGACGTGGCCACCGCCGCCAGCGTCGGCGCCGCCAAACTCAGCCTGAACAGCCAGCCCTTCGACCTGGCAC
TGACCGATATGCGCCTGCCGGACGGCGAGGGCATCGAAGTGGTGCGCCATATCGCCGAACAGGGCCTGGACGTGCCCATC
GCCGTGATCACCGCCTACGGCAACACCGACAACGCGGTGCTGGCGATGAAGGCCGGCGCCTTCGACTATCTGCAAAAACC
GGTCAGCCTGGCTCAATTGCGCAGCCTGGTGAAATCCGTGCTGCGTGTGGACAACGGCAAAACCGAGGCCGCGGTGCGGC
TGGACGGCGAATCGCCGGCGATCCAGGAAGCGCTGCGCTTGATCGGCAAGCTGGCGCGCAGCCAGGCCGCGGTTTACGTC
AGCGGCGAATCCGGCACCGGCAAGGAACAGGCGGCGCGGATGATACACGAGCACAGCGCGCGCGCCGAACGGCCATTCAT
CCCGGTCAACTGCGGCGCCATCCCGGAAACGCTGATGGAAAGCGAATTCTTCGGCTATCGCAAAGGCGCGTTCACCGGCG
CCGACAACGACCGCGACGGCTTCTTTCAACAAGCCAACGGCGGCACGCTGTTTCTGGACGAAGTGGCCGACCTGCCGCTG
GCGATGCAGGTCAAACTGCTGCGCGCGATTCAGGAAAAGAAAGTGCGCCGCCTGGGCAACGCCCAGGAAGAAGCGGTGGA
CGTGCGCATCATCTGCGCCACCCACAAGGACCTGGCGGCGCGGGTAGACGCCGGCAACTTTCGCCAGGATCTGTACTACC
GGCTAAACGTGCTGCCGCTGCGCATGCCGCCGCTGCGCGAACTGCGCGAGGACCTGCCGCGCTACATCGCCAGCCTGCTG
GAACGCTTTTCCCCCGACGAAAAGCCGCGGCTGGCGCCGGCGGCGCTCAAGGCCTTGCTGGAATACAACTATCCGGGCAA
CTTCCGCGAACTGGAAAACATCCTGGAACGCGCGGTGGCCCTGGCCAACGACGCCCGCATTGAATTGCGGGATCTGCAAC
TGCTGCCTAGCGATCACGGCGGCCAGGGCGATGGAGAGGCGCCAACTTGCGCCGATGGCGAGGCGCTGCAGGATTTTCTG
GACCGGGTGGAGCGCGAAGCCATCCTCAAGGCGCTGGAGAGCACCCGCTTCAACCGCACCCAGGCCGCCAAGACGCTGGG
CGTCACCTTCCGATCGATGCGCTATCGGATGGAAAGGCTGGGCATCAAGTAA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (136-300)

• Response regulator receiver domain (Response_reg) (8-117)

• Bacterial regulatory protein, Fis family (HTH_8) (400-439)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.202	100	0.585
pilR	Acinetobacter baumannii strain A118	45.161	100	0.474
luxO	Vibrio cholerae strain A1552	37.162	100	0.372