Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   DXX82_RS08000 Genome accession   NZ_CP031477
Coordinates   1636663..1637388 (+) Length   241 a.a.
NCBI ID   WP_049366102.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M27794     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1631663..1642388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX82_RS07975 thiP 1631796..1633400 (+) 1605 WP_049366110.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP -
  DXX82_RS07980 thiQ 1633393..1634022 (+) 630 WP_049366108.1 thiamine ABC transporter ATP-binding protein -
  DXX82_RS07985 bioB 1634096..1635112 (+) 1017 WP_049366106.1 biotin synthase BioB -
  DXX82_RS07990 suhB 1635157..1635957 (-) 801 WP_005695663.1 inositol-1-monophosphatase -
  DXX82_RS07995 comN 1636157..1636675 (+) 519 WP_049366104.1 hypothetical protein Machinery gene
  DXX82_RS08000 comO 1636663..1637388 (+) 726 WP_049366102.1 type II secretion system protein J Machinery gene
  DXX82_RS08005 comP 1637385..1638071 (+) 687 WP_049366101.1 DUF2572 family protein Machinery gene
  DXX82_RS08010 comQ 1638085..1638351 (+) 267 WP_014065666.1 DUF5374 domain-containing protein Machinery gene
  DXX82_RS08015 recC 1638389..1641748 (+) 3360 WP_115912427.1 exodeoxyribonuclease V subunit gamma -
  DXX82_RS08020 nrdR 1641826..1642275 (+) 450 WP_005695670.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27112.16 Da        Isoelectric Point: 7.0444

>NTDB_id=307146 DXX82_RS08000 WP_049366102.1 1636663..1637388(+) (comO) [Haemophilus parainfluenzae strain M27794]
MYKMKPLKGETLVSLLISLGLSALLLLLVAQFYAQTQQQNQRLMLQLKLQTELQRTIQLIGKDLRRVGFRAANQKLIEDN
LALFELDENGTAITIAQADNAPSNSCVLFFYDLNSNGCIGEKYTKNTCVNGVKNVAKNIEKELFGYKLNDKMIETKQTYK
NSVNADCRSEECQRALAQSTCNAGGGWTDLLDEKEFEISQLRFDWLKAGKGIEIKLAGNLATHKHIQYETSLVVPLLNQE
E

Nucleotide


Download         Length: 726 bp        

>NTDB_id=307146 DXX82_RS08000 WP_049366102.1 1636663..1637388(+) (comO) [Haemophilus parainfluenzae strain M27794]
ATGTACAAGATGAAACCATTAAAAGGCGAAACATTGGTGAGTTTGTTGATTTCACTTGGCTTATCCGCTTTATTATTGCT
ATTGGTTGCACAATTTTATGCCCAAACTCAACAGCAAAATCAGCGTTTAATGTTACAACTCAAACTACAAACGGAATTAC
AACGTACAATTCAACTCATCGGGAAAGATCTGCGTCGCGTAGGTTTTCGAGCCGCAAACCAAAAACTCATCGAGGATAAT
CTGGCTTTATTTGAATTGGATGAAAACGGCACTGCAATAACCATTGCTCAAGCTGATAATGCTCCATCAAATAGCTGTGT
TTTATTTTTTTATGATTTGAATAGTAATGGCTGTATTGGTGAAAAATACACAAAAAACACTTGCGTAAATGGCGTTAAAA
ATGTGGCAAAAAATATCGAAAAAGAGCTATTTGGTTACAAACTTAACGACAAAATGATCGAAACTAAACAAACCTATAAA
AATTCGGTAAATGCAGATTGTCGCTCAGAAGAGTGTCAGAGAGCCTTAGCACAATCTACTTGTAACGCTGGTGGTGGATG
GACTGATTTATTGGATGAAAAAGAGTTTGAGATTTCTCAATTACGTTTTGATTGGTTAAAGGCAGGGAAAGGGATTGAAA
TCAAACTCGCGGGAAATCTTGCAACACATAAGCATATTCAATATGAAACTTCGCTTGTGGTGCCTTTATTAAATCAAGAA
GAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

62.821

97.095

0.61

Multiple sequence alignment