Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   DXX82_RS07460 Genome accession   NZ_CP031477
Coordinates   1523561..1524229 (+) Length   222 a.a.
NCBI ID   WP_005698403.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M27794     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1518561..1529229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX82_RS07425 rpmG 1519411..1519581 (-) 171 WP_005613503.1 50S ribosomal protein L33 -
  DXX82_RS07430 rpmB 1519593..1519829 (-) 237 WP_005599762.1 50S ribosomal protein L28 -
  DXX82_RS07435 radC 1520048..1520713 (-) 666 WP_115912318.1 DNA repair protein RadC -
  DXX82_RS07440 coaBC 1520916..1522118 (+) 1203 WP_115912321.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  DXX82_RS07445 dut 1522192..1522647 (+) 456 WP_115912323.1 dUTP diphosphatase -
  DXX82_RS07450 slmA 1522651..1523304 (+) 654 WP_005698358.1 nucleoid occlusion factor SlmA -
  DXX82_RS07455 - 1523326..1523544 (+) 219 WP_115912944.1 YheU family protein -
  DXX82_RS07460 crp 1523561..1524229 (+) 669 WP_005698403.1 cAMP-activated global transcriptional regulator CRP Regulator
  DXX82_RS07465 nagE 1524737..1526203 (-) 1467 WP_115912325.1 N-acetylglucosamine-specific PTS transporter subunit IIBC -
  DXX82_RS07470 - 1526421..1527110 (+) 690 WP_115912328.1 N-acetylmannosamine-6-phosphate 2-epimerase -
  DXX82_RS07475 - 1527122..1528060 (+) 939 WP_005695558.1 N-acetylmannosamine kinase -
  DXX82_RS07480 - 1528053..1528919 (+) 867 WP_005695559.1 MurR/RpiR family transcriptional regulator -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25121.87 Da        Isoelectric Point: 6.6936

>NTDB_id=307142 DXX82_RS07460 WP_005698403.1 1523561..1524229(+) (crp) [Haemophilus parainfluenzae strain M27794]
MSEDVELLEEQKSQDDDQQRDPALDWFLTHCHLHKYPAKSTLIHAGEDANILYFLIKGTVMVSSKDDEGKEMILSYLGAG
QFFGEAGLFDEGSKRSAWVKTKTPCEIAEISYKKYRQLIQINPEILMFLTAQLSKRLQNTSRQVTNLAFLDVAGRIAQAL
MHLAKQPEAMTHPDGMQIKITRQEIGQMVGCSRETVGRIIKMLEDQNLIHAHGKTIVVYGTR

Nucleotide


Download         Length: 669 bp        

>NTDB_id=307142 DXX82_RS07460 WP_005698403.1 1523561..1524229(+) (crp) [Haemophilus parainfluenzae strain M27794]
ATGTCAGAAGATGTAGAATTACTAGAAGAACAAAAGTCGCAAGACGATGATCAGCAGCGTGATCCAGCTCTGGATTGGTT
CCTTACACACTGTCATTTGCATAAATATCCAGCAAAATCGACCTTAATTCATGCTGGTGAAGATGCCAATATTCTGTATT
TCTTAATTAAAGGGACCGTAATGGTTTCATCAAAAGATGATGAAGGCAAAGAGATGATTTTATCTTATTTAGGCGCGGGA
CAATTTTTTGGTGAAGCAGGTTTATTTGATGAAGGTTCGAAACGTTCTGCTTGGGTGAAAACCAAAACGCCTTGTGAAAT
TGCGGAAATTTCCTATAAAAAATATCGTCAGTTGATTCAAATTAACCCTGAGATTTTAATGTTCCTTACTGCTCAGTTAT
CAAAACGCTTGCAAAATACATCGCGACAAGTGACTAACTTGGCCTTTTTAGATGTGGCAGGACGTATTGCTCAGGCGCTT
ATGCATTTAGCAAAACAACCTGAAGCGATGACGCATCCTGATGGTATGCAGATTAAAATTACACGTCAGGAAATCGGTCA
AATGGTAGGGTGCTCGCGTGAAACCGTAGGGCGAATCATTAAGATGCTGGAAGATCAAAATTTAATCCATGCGCACGGCA
AAACCATTGTGGTTTACGGCACTCGATAG

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(154-218)

Cyclic nucleotide-binding domain (cNMP_binding)

(34-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Haemophilus influenzae Rd KW20

87.054

100

0.878
  crp Vibrio cholerae strain A1552

73.529

91.892

0.676
  crp Acinetobacter baumannii D1279779

46.734

89.64

0.419

Multiple sequence alignment