Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   DVV14_RS13355 Genome accession   NZ_CP031472
Coordinates   2888073..2888705 (-) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio coralliilyticus strain RE22     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2883073..2893705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DVV14_RS13340 (DVV14_13415) astA 2884480..2885499 (+) 1020 WP_006963238.1 arginine N-succinyltransferase -
  DVV14_RS13345 (DVV14_13420) astD 2885517..2886974 (+) 1458 WP_064488784.1 succinylglutamate-semialdehyde dehydrogenase -
  DVV14_RS13350 (DVV14_13425) - 2887153..2887944 (+) 792 WP_006963236.1 DUF1338 domain-containing protein -
  DVV14_RS13355 (DVV14_13430) crp 2888073..2888705 (-) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  DVV14_RS13360 (DVV14_13435) - 2888948..2889817 (-) 870 WP_019276788.1 phosphoribulokinase -
  DVV14_RS13365 (DVV14_13440) - 2889905..2890117 (-) 213 WP_019276787.1 YheU family protein -
  DVV14_RS13370 (DVV14_13445) - 2890157..2891134 (-) 978 WP_019276786.1 hydrolase -
  DVV14_RS13375 (DVV14_13450) - 2891146..2891622 (-) 477 WP_038513779.1 TIGR02444 family protein -
  DVV14_RS13380 (DVV14_13455) - 2891619..2893541 (-) 1923 WP_064488783.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=307067 DVV14_RS13355 WP_004410522.1 2888073..2888705(-) (crp) [Vibrio coralliilyticus strain RE22]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=307067 DVV14_RS13355 WP_004410522.1 2888073..2888705(-) (crp) [Vibrio coralliilyticus strain RE22]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCGTCAAA
AAGCACGCTGATCCACGCGGGCGAAAAAGCAGAGACTCTTTACTACATTGTTAAAGGTTCTGTTGCAGTACTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAAGGTGACTTTATCGGTGAACTTGGTTTATTCGAAGAAGAC
CAAGAGCGTACGGCATGGGTTCGTGCGAAATCTCCTTGTGAAGTAGCAGAAATTTCATTCAAGAAATTCCGTCAGCTAAT
CCAAGTTAACCCTGACATCCTAATGCGCCTGTCTGCACAAATGGCAAGCCGTCTACAGGTAACCAGTCAGAAAGTGGGTG
ACTTGGCATTCCTAGACGTAACAGGCCGCATCGCGCAAACACTGCTTAACCTGGCGAAACAGCCAGATGCAATGACGCAC
CCAGACGGCATGCAGATCAAGATCACTCGTCAGGAAATCGGTCAGATTGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCCCACGGTAAGACAATCGTTGTTTACGGAACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment