Detailed information NTG0307051

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: DVV14_RS09575
• Genome accession: NZ_CP031472
• Coordinates: 2122536..2123405 (+)
• Length: 289 a.a.
• NCBI ID: WP_064488045.1
• Uniprot ID: -
• Organism: Vibrio coralliilyticus strain RE22
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2117536..2128405

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DVV14_RS09555 (DVV14_09610)	nadC	2118059..2118946 (+)	888	WP_019277527.1	carboxylating nicotinate-nucleotide diphosphorylase	-
DVV14_RS09560 (DVV14_09615)	-	2119174..2119614 (+)	441	WP_064488042.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
DVV14_RS09565 (DVV14_09620)	pilB	2119617..2121263 (+)	1647	WP_064488043.1	type IV-A pilus assembly ATPase PilB	Machinery gene
DVV14_RS09570 (DVV14_09625)	-	2121272..2122486 (+)	1215	WP_064488044.1	type II secretion system F family protein	-
DVV14_RS09575 (DVV14_09630)	pilD	2122536..2123405 (+)	870	WP_064488045.1	A24 family peptidase	Machinery gene
DVV14_RS09580 (DVV14_09635)	coaE	2123407..2124015 (+)	609	WP_064488046.1	dephospho-CoA kinase	-
DVV14_RS09585 (DVV14_09640)	zapD	2124049..2124789 (+)	741	WP_043009234.1	cell division protein ZapD	-
DVV14_RS09590 (DVV14_09645)	yacG	2124841..2125035 (+)	195	WP_019277521.1	DNA gyrase inhibitor YacG	-
DVV14_RS09595 (DVV14_09650)	rplS	2125259..2125612 (-)	354	WP_006958143.1	50S ribosomal protein L19	-
DVV14_RS09600 (DVV14_09655)	trmD	2125654..2126397 (-)	744	WP_006958144.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
DVV14_RS09605 (DVV14_09660)	rimM	2126425..2126973 (-)	549	WP_031343344.1	ribosome maturation factor RimM	-
DVV14_RS09610 (DVV14_09665)	rpsP	2127003..2127251 (-)	249	WP_005438039.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32537.51 Da
• Isoelectric Point: 6.6830

>NTDB_id=307051 DVV14_RS09575 WP_064488045.1 2122536..2123405(+) (pilD) [Vibrio coralliilyticus strain RE22]
MDLFNYYPWLFPTLATIFGLIIGSFLNVVIHRLPQMMEREWRHECAESFPEYGIAPPHGTYNLSIPRSTCPSCKTQIRNL
DNIPVISWLLLRGKCRACQAKISPRYPLVELLSGAMSFAIAYQFELSAFAIALLFFTFVLIAATFIDFDTMLLPDQLTFP
LIWSGIALALLDFSPVSLQDSVIGAMAGYLCLWFVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQYLPVIVLLSSLVGL
VFGIIQLRLQKQGIDKAFPFGPYLAIAGWVSAMWGENIINWYFTQILGI

Nucleotide

• Length: 870 bp

>NTDB_id=307051 DVV14_RS09575 WP_064488045.1 2122536..2123405(+) (pilD) [Vibrio coralliilyticus strain RE22]
ATGGATCTGTTTAACTATTACCCGTGGTTGTTTCCCACACTTGCCACTATTTTTGGCCTGATCATTGGCAGTTTTCTCAA
CGTAGTAATCCACCGTTTACCACAAATGATGGAGCGAGAGTGGCGACACGAGTGTGCTGAAAGCTTCCCAGAATACGGTA
TCGCTCCTCCACACGGTACCTATAACCTCAGTATTCCTCGCTCCACCTGCCCAAGCTGTAAAACGCAAATCCGTAATCTC
GACAATATCCCGGTTATTAGCTGGCTACTTTTGCGTGGTAAATGTCGTGCCTGTCAGGCCAAAATTAGCCCTCGCTATCC
GTTGGTTGAGTTGCTGTCAGGTGCAATGAGCTTTGCTATTGCTTATCAGTTTGAACTGAGCGCTTTTGCCATCGCCCTGC
TATTTTTTACCTTCGTCCTGATTGCGGCAACATTCATTGATTTTGATACCATGCTGCTGCCAGACCAGCTTACCTTTCCG
CTAATTTGGTCAGGTATTGCTCTTGCCTTATTAGACTTCAGCCCGGTTTCCCTGCAAGATTCTGTTATTGGGGCTATGGC
GGGTTATTTATGTTTATGGTTTGTCTACTGGGGCTTCAAATTACTCACTGGTAAAGAAGGCATGGGCTATGGAGATTTCA
AACTTCTTGCCGCACTAGGCGCTTGGTTAGGTTGGCAGTACTTGCCTGTTATCGTGTTACTTTCCTCATTAGTAGGCCTA
GTCTTTGGCATTATTCAACTGCGACTACAAAAGCAAGGTATAGATAAAGCTTTTCCATTTGGCCCTTATCTCGCTATTGC
GGGATGGGTCAGTGCCATGTGGGGAGAGAACATCATAAATTGGTACTTCACACAAATCTTGGGGATCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	75.779	100	0.758
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	51.661	93.772	0.484
pilD	Acinetobacter nosocomialis M2	51.661	93.772	0.484
pilD	Neisseria gonorrhoeae MS11	47.735	99.308	0.474