Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   LAF_RS04235 Genome accession   NC_010610
Coordinates   838774..840045 (+) Length   423 a.a.
NCBI ID   WP_012391093.1    Uniprot ID   -
Organism   Limosilactobacillus fermentum IFO 3956     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 833774..845045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LAF_RS04205 (LAF_0714) rpsB 833933..834712 (+) 780 WP_003681957.1 30S ribosomal protein S2 -
  LAF_RS04210 (LAF_0715) tsf 834803..835681 (+) 879 WP_003681955.1 translation elongation factor Ts -
  LAF_RS04215 (LAF_0716) pyrH 835762..836487 (+) 726 WP_003681954.1 UMP kinase -
  LAF_RS04220 (LAF_0717) frr 836487..837047 (+) 561 WP_003685219.1 ribosome recycling factor -
  LAF_RS04225 (LAF_0718) - 837180..837947 (+) 768 WP_015638805.1 isoprenyl transferase -
  LAF_RS04230 (LAF_0719) - 837964..838752 (+) 789 WP_012391092.1 phosphatidate cytidylyltransferase -
  LAF_RS04235 (LAF_0720) eeP 838774..840045 (+) 1272 WP_012391093.1 RIP metalloprotease RseP Regulator
  LAF_RS04240 (LAF_0721) - 840079..841800 (+) 1722 WP_012391094.1 proline--tRNA ligase -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46217.61 Da        Isoelectric Point: 6.3997

>NTDB_id=30702 LAF_RS04235 WP_012391093.1 838774..840045(+) (eeP) [Limosilactobacillus fermentum IFO 3956]
MIITIITFIIVFGILVLVHEFGHYYFAKRAGILVREFSIGMGPKVWWRRSNGTTYTIRILPLGGYVRLAGTDEDEDELRP
GTPVTLQTNEEGKVTLINASEKETLLEGIPLRIVDSDLEDKLIISGYENDDEETVKTYPVDHDATIVERDGTEVRIAPKD
VQFQSASLPARMMTNFAGPMNNFILSLLVFIILGFTLSGIPTNSNVLGGVTKDSVAAKAGLVSGDKITRVATTKVSTWND
ISQAISPNPGKKLAVTYQRDGKTYHTTVTPKATKQGSQTVGMIGIREEEKFDPVARINYGWRQFITAGTLIFAVLGHMIT
HGFSLNDLGGPVAIYAGTSQATSLGINGILAFLAMLSINLGIVNLIPIPALDGGKLLLNIVEGIIRRPIPEKVEGILNLA
GFAILMILMVLVTYNDIQRYFIH

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=30702 LAF_RS04235 WP_012391093.1 838774..840045(+) (eeP) [Limosilactobacillus fermentum IFO 3956]
TTGATCATCACCATCATTACTTTTATCATCGTCTTCGGAATCCTGGTGCTCGTTCACGAATTCGGCCACTACTACTTTGC
CAAGCGGGCCGGGATTTTGGTGCGCGAGTTTTCGATTGGGATGGGGCCCAAGGTTTGGTGGCGGCGTTCAAACGGGACGA
CCTACACCATCCGGATCCTGCCGCTTGGGGGCTACGTCCGCCTGGCCGGGACCGATGAAGATGAAGACGAACTCCGTCCC
GGGACGCCGGTGACCTTGCAAACCAATGAGGAAGGCAAGGTGACCCTGATCAACGCCAGCGAAAAGGAAACCCTGTTGGA
GGGGATTCCGCTGCGGATCGTTGACAGCGACCTGGAGGATAAGTTAATCATCTCCGGGTACGAAAATGATGATGAAGAAA
CCGTCAAGACCTACCCGGTTGATCACGACGCGACGATCGTCGAACGGGACGGGACCGAGGTGCGGATCGCCCCCAAGGAC
GTTCAGTTCCAATCGGCCAGCTTACCGGCGCGGATGATGACCAACTTTGCCGGGCCAATGAACAACTTCATCTTGTCCCT
GCTGGTCTTCATCATCCTGGGCTTTACCCTGAGCGGGATCCCCACCAACTCCAACGTTTTGGGCGGGGTGACCAAGGATT
CGGTGGCTGCCAAGGCCGGCCTGGTGAGCGGCGATAAAATTACCAGGGTGGCGACGACCAAGGTCAGCACCTGGAACGAT
ATTTCCCAGGCAATTTCCCCTAACCCGGGGAAGAAGCTCGCCGTTACCTACCAGCGCGATGGCAAGACCTACCACACCAC
CGTGACGCCTAAGGCCACCAAACAGGGGAGCCAAACGGTCGGGATGATCGGGATCAGAGAAGAGGAGAAGTTTGATCCGG
TCGCCCGCATTAACTACGGCTGGCGCCAATTTATCACCGCCGGCACCCTGATCTTTGCGGTGCTCGGCCACATGATTACG
CACGGCTTTAGCTTAAACGACCTGGGGGGGCCGGTGGCAATTTACGCCGGCACCTCGCAGGCCACCTCGTTAGGGATTAA
CGGCATCCTCGCCTTCTTGGCGATGCTGTCGATTAACCTAGGGATCGTTAACCTGATTCCGATCCCGGCCTTAGACGGGG
GGAAGCTCCTCTTAAACATTGTCGAAGGCATCATTCGCCGGCCAATTCCCGAAAAAGTGGAGGGGATTTTGAATTTGGCT
GGCTTTGCCATCTTGATGATCCTGATGGTCCTTGTGACCTATAACGACATTCAACGCTACTTTATCCATTAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(7-408)

PDZ domain (PDZ_2)

(209-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

48.113

100

0.482
  eeP Streptococcus thermophilus LMD-9

48.113

100

0.482

Multiple sequence alignment