Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   S65EC_RS21610 Genome accession   NZ_CP036245
Coordinates   4141025..4141615 (-) Length   196 a.a.
NCBI ID   WP_000633668.1    Uniprot ID   P0AGA7
Organism   Escherichia coli strain S65EC     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 4136025..4146615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S65EC_RS21595 (S65EC_03963) uhpT 4136665..4138056 (-) 1392 WP_000879199.1 hexose-6-phosphate:phosphate antiporter -
  S65EC_RS21600 (S65EC_03964) uhpC 4138194..4139513 (-) 1320 WP_001296565.1 MFS transporter family glucose-6-phosphate receptor UhpC -
  S65EC_RS21605 (S65EC_03965) uhpB 4139523..4141025 (-) 1503 WP_001304997.1 signal transduction histidine-protein kinase/phosphatase UhpB -
  S65EC_RS21610 (S65EC_03966) letA 4141025..4141615 (-) 591 WP_000633668.1 transcriptional regulator UhpA Regulator
  S65EC_RS27715 - 4142099..4142959 (+) 861 Protein_4005 DUF6708 domain-containing protein -
  S65EC_RS21620 (S65EC_03968) ilvN 4143025..4143315 (-) 291 WP_001181706.1 acetolactate synthase small subunit -
  S65EC_RS21625 (S65EC_03969) ilvB 4143319..4145007 (-) 1689 WP_000168502.1 acetolactate synthase large subunit -
  S65EC_RS21630 ivbL 4145113..4145211 (-) 99 WP_001312198.1 ilvB operon leader peptide IvbL -
  S65EC_RS27185 ysdE 4145456..4145530 (-) 75 WP_211180519.1 protein YsdE -

Sequence


Protein


Download         Length: 196 a.a.        Molecular weight: 20889.30 Da        Isoelectric Point: 5.9982

>NTDB_id=306931 S65EC_RS21610 WP_000633668.1 4141025..4141615(-) (letA) [Escherichia coli strain S65EC]
MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSV
HDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW

Nucleotide


Download         Length: 591 bp        

>NTDB_id=306931 S65EC_RS21610 WP_000633668.1 4141025..4141615(-) (letA) [Escherichia coli strain S65EC]
ATGATCACCGTTGCCCTTATAGACGATCACCTTATCGTCCGCTCCGGCTTTGCGCAGCTGCTGGGGCTGGAACCTGATTT
GCAGGTAGTTGCCGAGTTTGGTTCGGGGCGCGAGGCGCTGGCGGGGCTGCCGGGGCGCGGTGTGCAGGTGTGTATTTGCG
ATATCTCCATGCCTGATATCTCCGGTCTGGAGCTTCTAAGCCAGCTGCCGAAAGGCATGGCGACAATTATGCTCTCCGTT
CACGACAGTCCGGCGCTGGTTGAGCAGGCGCTTAACGCGGGGGCGCGCGGCTTTCTCTCCAAACGCTGTAGCCCGGATGA
ACTCATTGCTGCGGTGCATACGGTTGCCACTGGCGGCTGTTATCTGACGCCGGATATTGCCATTAAACTGGCATCTGGTC
GCCAGGACCCGCTAACCAAACGCGAACGCCAGGTGGCAGAAAAACTGGCGCAAGGAATGGCGGTGAAAGAGATTGCCGCC
GAACTGGGCTTGTCGCCGAAAACAGTACACGTCCATCGCGCCAATCTGATGGAAAAACTGGGCGTCAGTAACGACGTTGA
ACTGGCGCGCCGCATGTTTGATGGCTGGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB P0AGA7

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

38.5

100

0.393

  letA Legionella pneumophila strain ERS1305867

38.5

100

0.393

  degU Bacillus subtilis subsp. subtilis str. 168

33.184

100

0.378


Multiple sequence alignment