Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   DYB08_RS08295 Genome accession   NZ_CP031444
Coordinates   1718556..1719374 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain MDR-UNC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1713556..1724374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB08_RS08280 (DYB08_08280) pilE 1713773..1714198 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  DYB08_RS08285 (DYB08_08285) pilY2 1714195..1714677 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  DYB08_RS08290 (DYB08_08290) pilY1 1714690..1718544 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  DYB08_RS08295 (DYB08_08295) pilX 1718556..1719374 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  DYB08_RS08300 (DYB08_08300) pilW 1719371..1720372 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  DYB08_RS08305 (DYB08_08305) pilV 1720373..1720933 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  DYB08_RS08310 (DYB08_08310) fimU 1720927..1721400 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DYB08_RS08315 (DYB08_08315) ispH 1721570..1722520 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  DYB08_RS08320 (DYB08_08320) gmk 1722643..1723272 (+) 630 WP_000015937.1 guanylate kinase -
  DYB08_RS08325 (DYB08_08325) rpoZ 1723345..1723623 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=306739 DYB08_RS08295 WP_000149374.1 1718556..1719374(-) (pilX) [Acinetobacter baumannii strain MDR-UNC]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=306739 DYB08_RS08295 WP_000149374.1 1718556..1719374(-) (pilX) [Acinetobacter baumannii strain MDR-UNC]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment