Detailed information
Bioinformatically predicted
Overview
| Name | pilE | Type | Machinery gene |
| Locus tag | DYB08_RS08280 | Genome accession | NZ_CP031444 |
| Coordinates | 1713773..1714198 (-) | Length | 141 a.a. |
| NCBI ID | WP_000788342.1 | Uniprot ID | N9K1U0 |
| Organism | Acinetobacter baumannii strain MDR-UNC | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1708773..1719198
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DYB08_RS08250 (DYB08_08250) | - | 1709730..1710671 (+) | 942 | WP_085916958.1 | lipase family alpha/beta hydrolase | - |
| DYB08_RS08255 (DYB08_08255) | rplS | 1710724..1711092 (-) | 369 | WP_000014561.1 | 50S ribosomal protein L19 | - |
| DYB08_RS08260 (DYB08_08260) | trmD | 1711301..1712041 (-) | 741 | WP_000464598.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| DYB08_RS08265 (DYB08_08265) | - | 1712109..1712768 (-) | 660 | WP_000782406.1 | IS1595-like element ISAba36 family transposase | - |
| DYB08_RS08270 (DYB08_08270) | rimM | 1712807..1713355 (-) | 549 | WP_000189236.1 | ribosome maturation factor RimM | - |
| DYB08_RS08275 (DYB08_08275) | rpsP | 1713375..1713626 (-) | 252 | WP_000260334.1 | 30S ribosomal protein S16 | - |
| DYB08_RS08280 (DYB08_08280) | pilE | 1713773..1714198 (-) | 426 | WP_000788342.1 | type IV pilin protein | Machinery gene |
| DYB08_RS08285 (DYB08_08285) | pilY2 | 1714195..1714677 (-) | 483 | WP_001046420.1 | type IV pilin protein | Machinery gene |
| DYB08_RS08290 (DYB08_08290) | pilY1 | 1714690..1718544 (-) | 3855 | WP_000768970.1 | PilC/PilY family type IV pilus protein | Machinery gene |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15214.45 Da Isoelectric Point: 7.8464
>NTDB_id=306736 DYB08_RS08280 WP_000788342.1 1713773..1714198(-) (pilE) [Acinetobacter baumannii strain MDR-UNC]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTATPISTSSQAGDGIICLNDQGQKFWAKGATVCALSASSSWTE
Nucleotide
Download Length: 426 bp
>NTDB_id=306736 DYB08_RS08280 WP_000788342.1 1713773..1714198(-) (pilE) [Acinetobacter baumannii strain MDR-UNC]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTGAATGATTCAACTTGGGTACTTACTGCAACACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATTTTGGGCAAAAGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCAAGTTGGACAGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilE | Acinetobacter baumannii D1279779 |
92.199 |
100 |
0.922 |
| comF | Acinetobacter baylyi ADP1 |
52.143 |
99.291 |
0.518 |