Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   DXX91_RS16955 Genome accession   NZ_CP031424
Coordinates   3386881..3387570 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain B-4     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3381881..3392570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX91_RS16920 - 3382079..3382561 (-) 483 WP_003151394.1 flagellar protein FlgN -
  DXX91_RS16925 flgM 3382576..3382842 (-) 267 WP_057080258.1 flagellar biosynthesis anti-sigma factor FlgM -
  DXX91_RS16930 - 3382912..3383331 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  DXX91_RS16935 comFC 3383405..3384094 (-) 690 WP_205649078.1 phosphoribosyltransferase family protein Machinery gene
  DXX91_RS16940 - 3384100..3384384 (-) 285 WP_003151389.1 competence protein ComFB -
  DXX91_RS16945 comFA 3384442..3385827 (-) 1386 WP_115996753.1 DEAD/DEAH box helicase Machinery gene
  DXX91_RS16950 - 3385935..3386783 (-) 849 WP_044052857.1 DegV family protein -
  DXX91_RS16955 degU 3386881..3387570 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DXX91_RS16960 degS 3387647..3388810 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  DXX91_RS16965 - 3389033..3389680 (+) 648 WP_060657503.1 YigZ family protein -
  DXX91_RS16970 - 3389685..3390899 (+) 1215 WP_003151383.1 LCP family protein -
  DXX91_RS16975 - 3390989..3392065 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=306710 DXX91_RS16955 WP_003219701.1 3386881..3387570(-) (degU) [Bacillus velezensis strain B-4]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=306710 DXX91_RS16955 WP_003219701.1 3386881..3387570(-) (degU) [Bacillus velezensis strain B-4]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTTCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment