Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   DXX91_RS16935 Genome accession   NZ_CP031424
Coordinates   3383405..3384094 (-) Length   229 a.a.
NCBI ID   WP_205649078.1    Uniprot ID   -
Organism   Bacillus velezensis strain B-4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3378405..3389094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX91_RS16900 fliW 3378496..3378927 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  DXX91_RS16905 - 3378957..3379526 (-) 570 WP_007407476.1 DUF6470 family protein -
  DXX91_RS16910 flgL 3379617..3380534 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  DXX91_RS16915 flgK 3380546..3382063 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  DXX91_RS16920 - 3382079..3382561 (-) 483 WP_003151394.1 flagellar protein FlgN -
  DXX91_RS16925 flgM 3382576..3382842 (-) 267 WP_057080258.1 flagellar biosynthesis anti-sigma factor FlgM -
  DXX91_RS16930 - 3382912..3383331 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  DXX91_RS16935 comFC 3383405..3384094 (-) 690 WP_205649078.1 phosphoribosyltransferase family protein Machinery gene
  DXX91_RS16940 - 3384100..3384384 (-) 285 WP_003151389.1 competence protein ComFB -
  DXX91_RS16945 comFA 3384442..3385827 (-) 1386 WP_115996753.1 DEAD/DEAH box helicase Machinery gene
  DXX91_RS16950 - 3385935..3386783 (-) 849 WP_044052857.1 DegV family protein -
  DXX91_RS16955 degU 3386881..3387570 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  DXX91_RS16960 degS 3387647..3388810 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25287.96 Da        Isoelectric Point: 8.4888

>NTDB_id=306708 DXX91_RS16935 WP_205649078.1 3383405..3384094(-) (comFC) [Bacillus velezensis strain B-4]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTERRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=306708 DXX91_RS16935 WP_205649078.1 3383405..3384094(-) (comFC) [Bacillus velezensis strain B-4]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAGGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGCGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGTTTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603

Multiple sequence alignment