Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsX   Type   Machinery gene
Locus tag   CCO2228_RS07365 Genome accession   NZ_CP035927
Coordinates   1449631..1450227 (-) Length   198 a.a.
NCBI ID   WP_002779313.1    Uniprot ID   A0ABP2NPG9
Organism   Campylobacter coli strain RM2228     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1444631..1455227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCO2228_RS07345 (CCO2228_1438) - 1445386..1446150 (+) 765 WP_002779265.1 TIGR02757 family protein -
  CCO2228_RS07350 (CCO2228_1439) - 1446153..1446917 (+) 765 WP_002784060.1 TSUP family transporter -
  CCO2228_RS07355 (CCO2228_1440) ctsF 1446914..1448089 (-) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  CCO2228_RS07360 (CCO2228_1441) ctsE 1448076..1449638 (-) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  CCO2228_RS07365 (CCO2228_1442) ctsX 1449631..1450227 (-) 597 WP_002779313.1 CDC27 family protein Machinery gene
  CCO2228_RS07370 (CCO2228_1443) ctsP 1450224..1450820 (-) 597 WP_002779314.1 ATP-binding protein Machinery gene
  CCO2228_RS07375 (CCO2228_1444) ctsD 1450813..1452231 (-) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  CCO2228_RS07380 (CCO2228_1445) ctsR 1452209..1452520 (-) 312 WP_002779316.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23760.21 Da        Isoelectric Point: 5.2295

>NTDB_id=306547 CCO2228_RS07365 WP_002779313.1 1449631..1450227(-) (ctsX) [Campylobacter coli strain RM2228]
MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQDFYKQKALALEALEYKKTLNWQITQAQIANEKNKIL
QERLSKDESKDELEEELKTQIDIYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD

Nucleotide


Download         Length: 597 bp        

>NTDB_id=306547 CCO2228_RS07365 WP_002779313.1 1449631..1450227(-) (ctsX) [Campylobacter coli strain RM2228]
ATGAATATAGAAGAAAGAGTGCGCGAGCTTGAGGATAAATATAAAAGATATTTATTGAAAAAATATTTTAAGTTTTTATT
TATCTTTGCCATTTTGATAGCATGCATGCTTATAAGCTTTTTTATGGTGCAAGATTTTTACAAACAAAAGGCCTTAGCTT
TAGAAGCTTTAGAATATAAAAAAACACTCAATTGGCAAATTACACAAGCGCAAATTGCAAATGAAAAAAATAAAATTTTA
CAAGAAAGATTATCCAAAGATGAAAGCAAAGATGAGTTAGAAGAGGAGTTGAAAACTCAAATTGATATTTATTCTAAGAT
TTTAAATATAAGTGATTTAAAAAGGAGTTTTTACCAAAATCCAAGCTATCAAAAAGCCATGAATTTAGCTACTCAGTATT
ATGAAAACAAAGATTATGAAAAGTCTATTTTTTGGTCTTTAAAAGCCAATGACATCGATAGAAAAAATTCAGACTCATGG
GTTTTATTTGCCAAGGCTAAACAAGCTTTAGGAAAAGATGAGGAGGCTAAGCAAGCTTTGGATACTTATGTAAGTTATTA
TGGCTTGATTGAATTTGATAAGGAAATAGATGATTGA

Domains

Predicted by InterProScan.

Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3)

(116-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsX Campylobacter jejuni subsp. jejuni 81-176

55.128

78.788

0.434