Detailed information NTG0306550

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: DWF74_RS24860
• Genome accession: NZ_CP031396
• Coordinates: 5481247..5483478 (+)
• Length: 743 a.a.
• NCBI ID: WP_115581893.1
• Uniprot ID: -
• Organism: Pseudomonas protegens strain FD6
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5476247..5488478

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DWF74_RS24835 (DWF74_24835)	-	5477372..5478031 (+)	660	WP_115581892.1	transglutaminase family protein	-
DWF74_RS24840 (DWF74_24840)	-	5478074..5478697 (+)	624	WP_102863932.1	glutathione S-transferase	-
DWF74_RS24845 (DWF74_24845)	-	5478830..5479762 (+)	933	WP_102863931.1	ABC transporter ATP-binding protein	-
DWF74_RS24850 (DWF74_24850)	-	5479759..5480538 (+)	780	WP_102863930.1	ABC transporter permease	-
DWF74_RS24855 (DWF74_24855)	-	5480592..5481107 (-)	516	WP_102863929.1	DUF2062 domain-containing protein	-
DWF74_RS24860 (DWF74_24860)	comA	5481247..5483478 (+)	2232	WP_115581893.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
DWF74_RS24865 (DWF74_24865)	exbB	5483581..5484216 (+)	636	WP_162884118.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
DWF74_RS24870 (DWF74_24870)	-	5484213..5484641 (+)	429	WP_102863926.1	biopolymer transporter ExbD	-
DWF74_RS24875 (DWF74_24875)	lpxK	5484641..5485651 (+)	1011	WP_115581894.1	tetraacyldisaccharide 4'-kinase	-
DWF74_RS24880 (DWF74_24880)	-	5485675..5485860 (+)	186	WP_011060103.1	Trm112 family protein	-
DWF74_RS24885 (DWF74_24885)	kdsB	5485857..5486621 (+)	765	WP_102863924.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
DWF74_RS24890 (DWF74_24890)	-	5486621..5487085 (+)	465	WP_102863923.1	low molecular weight protein-tyrosine-phosphatase	-
DWF74_RS24895 (DWF74_24895)	murB	5487082..5488101 (+)	1020	WP_115581895.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 743 a.a.
• Molecular weight: 81599.00 Da
• Isoelectric Point: 10.5886

>NTDB_id=306550 DWF74_RS24860 WP_115581893.1 5481247..5483478(+) (comA) [Pseudomonas protegens strain FD6]
MVTGTLALAAGLLALGFMPVLPPGWLLLLMAVGGLMLLPFRTHPVAFFLFGLAWACASGQWALDDRLPQFLDGQTRWLEG
RVVGLPEPGAGVVRFELRDAQSRRERLPRRIRLAWHGGPPVNSGERWRLAVKLRRPAGLLNLHGFDYEAWLLARRIGAVG
TVKDGQLLAPARHAWRDGLRQRVLAVEAHGRAAGLAALVMGDGSGLTREDWQLLQDTGTVHLMVISGQHISLLAAVIYLA
VAGLARYGLWPARWPWLPWACALAFVGALGYGLLAGFDVPVQRACVMVALVLLWRWRFRHLRAWWPLLLALNAVLLFEPL
ASLQPGFWLSYAAVAVLIFTFAGRLGSWRWWQSWTRAQWLMGIGLLPPLLALGLPISLSGPLANLLAVPWISLLVLPPAL
LGCLLLPVPYVGEGLLWLAGGLLDGLFRLLGAMAGFWPAWVAPLIPLWVWGLSSLGALLLLLPKGVPLRVLGWPLLLLAV
WPPQDPVPEGEVEIWQLDVGQGLSFILRTRDHAMLYDTGARVADFDLGERVVLPTLHKLGIRRLDLMLLSHADNDHAGGA
LAVQRGIPVSQVRSGEPEALPAALQSAPCDSGLSWHWNGARFTLWQWAEAADGNQASCVLLVEAGGERLLLTGDIDVHAE
RALLDSPLAVRIHWLQAPHHGSRTSSSMALLRRLAPKAVLISRGRGNAFGHPHPQVVARYRHLGMVIHDSAEQGALKLRL
GTFGQPESLRQQRRFWREWPAMP

Nucleotide

• Length: 2232 bp

>NTDB_id=306550 DWF74_RS24860 WP_115581893.1 5481247..5483478(+) (comA) [Pseudomonas protegens strain FD6]
ATGGTTACAGGGACGCTGGCCCTGGCCGCAGGACTGCTGGCGCTGGGTTTCATGCCGGTGCTGCCGCCCGGCTGGTTGTT
GCTGCTGATGGCGGTAGGGGGGCTGATGTTGCTGCCTTTTCGTACACATCCGGTGGCATTTTTTTTGTTCGGTTTGGCCT
GGGCCTGTGCATCCGGGCAATGGGCGCTGGATGATCGCCTGCCCCAGTTCCTGGATGGGCAAACCCGCTGGCTGGAAGGG
CGGGTGGTCGGCTTGCCGGAACCGGGGGCGGGCGTGGTGCGCTTTGAGCTCAGGGATGCCCAGTCCCGACGAGAGCGCCT
GCCGCGGCGAATTCGCCTGGCCTGGCACGGTGGGCCACCTGTCAATAGCGGCGAACGCTGGCGCCTGGCGGTCAAGCTGC
GGCGTCCTGCCGGTCTGCTCAATCTTCACGGTTTCGATTACGAAGCCTGGCTGCTGGCCCGGCGCATTGGGGCCGTCGGC
ACAGTCAAGGATGGGCAACTGCTGGCGCCGGCACGCCACGCCTGGCGTGATGGGCTGCGCCAGCGTGTACTCGCGGTCGA
GGCCCACGGCCGCGCCGCAGGCCTGGCGGCATTGGTGATGGGCGACGGTTCGGGGCTGACGCGGGAAGATTGGCAACTGT
TGCAGGACACCGGCACGGTGCACCTGATGGTGATATCCGGACAGCACATCAGCCTGCTGGCCGCAGTGATCTACCTTGCA
GTGGCAGGGCTGGCTCGTTACGGGCTTTGGCCCGCGCGCTGGCCCTGGCTGCCCTGGGCCTGCGCCCTGGCCTTTGTTGG
GGCGCTGGGCTACGGCCTGCTGGCAGGGTTCGATGTGCCGGTGCAGAGGGCCTGCGTGATGGTTGCGCTGGTGCTGCTCT
GGCGCTGGCGCTTTCGTCATCTGCGGGCTTGGTGGCCCTTGTTGCTGGCGTTGAATGCAGTGCTGTTGTTCGAGCCCCTG
GCCAGCTTGCAGCCAGGGTTCTGGCTGTCCTATGCCGCGGTGGCGGTGCTCATCTTCACCTTTGCCGGGCGCCTGGGTTC
CTGGCGTTGGTGGCAGAGTTGGACCCGCGCCCAGTGGTTGATGGGTATTGGCCTGTTGCCCCCCTTGCTGGCCCTTGGCT
TGCCCATCAGTCTCAGTGGTCCGCTGGCCAACCTGCTGGCGGTGCCCTGGATCAGTCTGCTGGTCCTGCCCCCGGCCTTG
CTGGGCTGTCTGTTGTTGCCTGTGCCATATGTGGGCGAAGGCCTGTTATGGCTGGCGGGTGGCCTGCTGGATGGGCTGTT
CCGCTTACTGGGGGCGATGGCCGGATTTTGGCCAGCCTGGGTGGCGCCGTTGATCCCCCTTTGGGTTTGGGGCCTGAGCA
GCTTGGGCGCGCTGTTGTTGCTGTTGCCCAAGGGCGTGCCACTGCGGGTGCTGGGTTGGCCGTTGTTGCTGTTGGCAGTC
TGGCCTCCCCAGGACCCTGTACCCGAGGGCGAGGTGGAGATCTGGCAGCTGGATGTGGGGCAGGGGTTGTCGTTCATCCT
GCGTACCCGTGATCACGCGATGTTGTATGACACCGGTGCGCGAGTCGCGGATTTCGACCTGGGGGAGCGAGTGGTGCTGC
CGACGCTGCATAAACTTGGCATTCGACGGTTGGACTTGATGCTGCTCAGCCACGCCGATAACGATCATGCCGGAGGCGCC
CTGGCAGTCCAGCGCGGGATACCGGTGAGCCAGGTGCGCAGCGGCGAGCCTGAGGCCTTGCCGGCTGCCCTGCAGTCGGC
TCCCTGTGATAGCGGGCTGAGCTGGCACTGGAATGGCGCTCGCTTCACGCTGTGGCAGTGGGCGGAGGCGGCAGACGGCA
ACCAGGCTTCCTGTGTGCTGCTGGTCGAGGCCGGCGGCGAACGCCTGCTGCTCACCGGCGATATCGATGTCCATGCTGAG
CGTGCCTTGCTCGACAGTCCGCTGGCGGTTCGCATTCACTGGTTGCAGGCGCCCCATCATGGCAGCCGTACCTCATCCTC
CATGGCCTTGCTCCGGCGGCTGGCGCCGAAGGCGGTGCTGATTTCCCGGGGGCGGGGCAATGCCTTTGGCCATCCTCATC
CCCAGGTGGTGGCGCGCTACCGGCACTTGGGCATGGTGATTCATGACAGTGCCGAGCAAGGTGCACTGAAGCTGCGGCTG
GGGACTTTCGGCCAGCCTGAAAGCCTGCGCCAACAGCGGCGCTTCTGGCGCGAATGGCCAGCAATGCCTTAA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-682)

• Domain of unknown function (DUF4131) (DUF4131) (21-167)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.877	96.501	0.616