Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   DWF74_RS24865 Genome accession   NZ_CP031396
Coordinates   5483581..5484216 (+) Length   211 a.a.
NCBI ID   WP_162884118.1    Uniprot ID   -
Organism   Pseudomonas protegens strain FD6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5478581..5489216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DWF74_RS24845 (DWF74_24845) - 5478830..5479762 (+) 933 WP_102863931.1 ABC transporter ATP-binding protein -
  DWF74_RS24850 (DWF74_24850) - 5479759..5480538 (+) 780 WP_102863930.1 ABC transporter permease -
  DWF74_RS24855 (DWF74_24855) - 5480592..5481107 (-) 516 WP_102863929.1 DUF2062 domain-containing protein -
  DWF74_RS24860 (DWF74_24860) comA 5481247..5483478 (+) 2232 WP_115581893.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  DWF74_RS24865 (DWF74_24865) exbB 5483581..5484216 (+) 636 WP_162884118.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  DWF74_RS24870 (DWF74_24870) - 5484213..5484641 (+) 429 WP_102863926.1 biopolymer transporter ExbD -
  DWF74_RS24875 (DWF74_24875) lpxK 5484641..5485651 (+) 1011 WP_115581894.1 tetraacyldisaccharide 4'-kinase -
  DWF74_RS24880 (DWF74_24880) - 5485675..5485860 (+) 186 WP_011060103.1 Trm112 family protein -
  DWF74_RS24885 (DWF74_24885) kdsB 5485857..5486621 (+) 765 WP_102863924.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  DWF74_RS24890 (DWF74_24890) - 5486621..5487085 (+) 465 WP_102863923.1 low molecular weight protein-tyrosine-phosphatase -
  DWF74_RS24895 (DWF74_24895) murB 5487082..5488101 (+) 1020 WP_115581895.1 UDP-N-acetylmuramate dehydrogenase -
  DWF74_RS24900 (DWF74_24900) - 5488353..5488823 (+) 471 WP_102863921.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22939.10 Da        Isoelectric Point: 7.3617

>NTDB_id=306551 DWF74_RS24865 WP_162884118.1 5483581..5484216(+) (exbB) [Pseudomonas protegens strain FD6]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTSNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=306551 DWF74_RS24865 WP_162884118.1 5483581..5484216(+) (exbB) [Pseudomonas protegens strain FD6]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCTGTGGGCATCATCGC
CGAGCGTTTGTGGACCCTGCGGGCCAGCCGAGTCACCCCGCCCCATTTGCTGGGCCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTCAATAAGGAGAAACTCAAGGAACTGCGTGCCGATTCGCCTCTGGGAGAGATCCTGGCAGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATCGAGGAGGCGGCGGCCCGGGTCATTCACGAACTCGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCCATGGCGCCCTTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCA
GTTCGTTCATGGGGTCGGGCATGACCAGCAACGCTGCAGTGCTTGCCGGTGGTATTTCCAAGGCACTGATCACCACTGCC
GCCGGTTTGATGGTGGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAGCTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGATGTCGACCTGGCTGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.678

100

0.877

Multiple sequence alignment