Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   DK878_RS03815 Genome accession   NZ_CP031379
Coordinates   746586..747590 (+) Length   334 a.a.
NCBI ID   WP_053866180.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2660     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 741586..752590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK878_RS03795 (DK878_03925) - 741787..742224 (+) 438 WP_002935805.1 CoA-binding protein -
  DK878_RS03800 (DK878_03930) - 742519..743361 (-) 843 WP_002935807.1 DUF975 family protein -
  DK878_RS03805 (DK878_03935) tgt 743815..744957 (+) 1143 WP_002935810.1 tRNA guanosine(34) transglycosylase Tgt -
  DK878_RS03810 (DK878_03945) - 745290..746375 (-) 1086 WP_002935811.1 Xaa-Pro peptidase family protein -
  DK878_RS03815 (DK878_03950) ccpA 746586..747590 (+) 1005 WP_053866180.1 catabolite control protein A Regulator
  DK878_RS03820 (DK878_03955) - 748022..749851 (-) 1830 WP_044668007.1 Spy0128 family protein -
  DK878_RS03825 (DK878_03960) - 750161..751159 (+) 999 WP_002935816.1 glycosyltransferase family 4 protein -
  DK878_RS03830 (DK878_03965) - 751160..752473 (+) 1314 WP_009910256.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36758.91 Da        Isoelectric Point: 5.5173

>NTDB_id=306396 DK878_RS03815 WP_053866180.1 746586..747590(+) (ccpA) [Streptococcus suis strain ISU2660]
MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYF
ATLAKGVDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
SVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEGLVFESKYKYEEGYALAERILNA
GATAAYVAEDEIAAGLLNGVSDMGVKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENRE
VVLNHGIKVRKSTK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=306396 DK878_RS03815 WP_053866180.1 746586..747590(+) (ccpA) [Streptococcus suis strain ISU2660]
ATGTTAAACACTGACGATACGGTAACGATTTATGACGTTGCCCGCGAAGCAGGTGTATCCATGGCGACAGTATCGCGCGT
GGTAAATGGGAATAAAAACGTAAAGGAAAATACTCGTAAAAAAGTATTAGAAGTCATCGACCGTTTGGATTATCGTCCGA
ATGCTGTTGCACGTGGCTTGGCCAGCAAGAAGACTACCACTGTGGGGGTTGTGATTCCAAATATTGCTAATGCTTATTTT
GCAACCTTGGCCAAAGGTGTCGATGATATTGCCGATATGTACAAATACAATATCGTCTTAGCAAACAGTGATGAAAATGA
TGAGAAAGAAATCAATGTGGTGAATACCCTATTCTCAAAACAGGTGGACGGAATCATTTTCATGGGCTATCATTTGACAG
ACAAGATTCGTGCGGAGTTTTCACGCTCACGTACACCGATTGTTTTAGCTGGTACCGTGGACTTGGAGCACCAATTACCT
AGCGTCAATATTGACTACGCTGCCGCTAGTGTTGATGCAGTCAATCTATTAGCTAAGAACAACAAGAAAATTGCCTTTGT
ATCAGGGCCGCTTGTAGATGACATCAACGGTAAAGTTCGTTTTGCAGGCTACAAACAAGGCTTGAAGGACAACGGAATCG
AGTTTAACGAAGGATTGGTTTTTGAATCCAAGTATAAATACGAGGAAGGCTACGCTCTAGCAGAACGTATTTTGAATGCC
GGAGCAACTGCAGCTTATGTTGCAGAAGATGAGATTGCTGCTGGTTTATTGAATGGTGTCAGTGATATGGGCGTCAAGGT
TCCAGAAGACTTTGAAATCATTACAAGTGATGATTCCCTAGTGACTAAGTTTACCCGTCCAAACCTGACCTCTATCAATC
AGCCACTATATGATATTGGTGCAATTGCTATGCGCATGCTCACCAAAATCATGCATAAGGAAGAGTTGGAAAACCGTGAG
GTAGTTCTTAACCACGGAATCAAAGTACGGAAATCAACTAAGTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-333)

Bacterial regulatory proteins, lacI family (LacI)

(9-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

79.88

99.701

0.796
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.279

99.701

0.79
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

59.517

99.102

0.59

Multiple sequence alignment