Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EXA00_RS06070 Genome accession   NZ_CP035860
Coordinates   1240917..1241654 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain TD225-C4     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1235917..1246654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA00_RS06040 yfiL 1236075..1236440 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  EXA00_RS06045 aroF 1236650..1237720 (+) 1071 WP_216334197.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  EXA00_RS06050 tyrA 1237731..1238852 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  EXA00_RS06055 pheA 1238895..1240055 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  EXA00_RS06060 pheL 1240154..1240201 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  EXA00_RS06065 raiA 1240305..1240646 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  EXA00_RS06070 comL 1240917..1241654 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  EXA00_RS06075 rluD 1241789..1242769 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EXA00_RS06080 yfiH 1242766..1243497 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  EXA00_RS06085 clpC 1243627..1246200 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=305968 EXA00_RS06070 WP_000197686.1 1240917..1241654(-) (comL) [Escherichia coli strain TD225-C4]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=305968 EXA00_RS06070 WP_000197686.1 1240917..1241654(-) (comL) [Escherichia coli strain TD225-C4]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376