Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   EXE31_RS15430 Genome accession   NZ_CP035855
Coordinates   3138357..3138989 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli TW11681     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3133357..3143989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXE31_RS15405 yheS 3133526..3135439 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  EXE31_RS15410 yheT 3135439..3136461 (+) 1023 WP_000057357.1 hydrolase -
  EXE31_RS15415 yheU 3136455..3136673 (+) 219 WP_000907085.1 YheU family protein -
  EXE31_RS15420 prkB 3136727..3137596 (+) 870 WP_001274680.1 phosphoribulokinase -
  EXE31_RS15425 yhfA 3137651..3138055 (-) 405 WP_001148908.1 OsmC family protein -
  EXE31_RS15430 crp 3138357..3138989 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  EXE31_RS15435 yhfK 3139040..3141130 (+) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  EXE31_RS15440 argD 3141197..3142417 (-) 1221 WP_000963787.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  EXE31_RS15445 pabA 3142503..3143066 (-) 564 WP_000601851.1 aminodeoxychorismate synthase component 2 -
  EXE31_RS15450 fic 3143098..3143700 (-) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  EXE31_RS15455 yhfG 3143690..3143857 (-) 168 WP_000736860.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=305902 EXE31_RS15430 WP_000242755.1 3138357..3138989(+) (crp) [Escherichia coli TW11681]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=305902 EXE31_RS15430 WP_000242755.1 3138357..3138989(+) (crp) [Escherichia coli TW11681]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTTGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment