Detailed information NTG0030578

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: XFASM23_RS10235
• Genome accession: NC_010577
• Coordinates: 2277462..2278874 (-)
• Length: 470 a.a.
• NCBI ID: WP_004090373.1
• Uniprot ID: Q87AA0
• Organism: Xylella fastidiosa M23
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2272462..2283874

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
XFASM23_RS10215 (XfasM23_2031)	-	2272597..2273043 (+)	447	WP_012382763.1	pilin	-
XFASM23_RS10220 (XfasM23_2032)	-	2273289..2273516 (-)	228	WP_011098310.1	hypothetical protein	-
XFASM23_RS10225 (XfasM23_2033)	-	2274352..2274792 (+)	441	WP_004090375.1	pilin	-
XFASM23_RS10230 (XfasM23_2034)	pilB	2275635..2277368 (+)	1734	WP_004090374.1	type IV-A pilus assembly ATPase PilB	Machinery gene
XFASM23_RS10235 (XfasM23_2035)	pilR	2277462..2278874 (-)	1413	WP_004090373.1	sigma-54 dependent transcriptional regulator	Regulator
XFASM23_RS10240 (XfasM23_2036)	-	2279060..2280670 (-)	1611	WP_004090372.1	ATP-binding protein	-
XFASM23_RS10245 (XfasM23_2037)	sucC	2280925..2282088 (+)	1164	WP_004090371.1	ADP-forming succinate--CoA ligase subunit beta	-
XFASM23_RS10250 (XfasM23_2038)	sucD	2282117..2282989 (+)	873	WP_004090370.1	succinate--CoA ligase subunit alpha	-

Sequence

Protein

• Length: 470 a.a.
• Molecular weight: 51272.13 Da
• Isoelectric Point: 7.2159

>NTDB_id=30578 XFASM23_RS10235 WP_004090373.1 2277462..2278874(-) (pilR) [Xylella fastidiosa M23]
MNESRSALIVDDERDIRELLVLTLGRMGLRIRTAANLAQAYALLESDSFNLCITDMRLPDGSGIELVKKIVRHYPRTPVA
MITAFGSIELAVEALKEGAFDFVSKPVDLNVLRGMVRHALELNNRERSVVSSQPQSPSQRLLGESSPMAQLRATIAKVAR
SQAPVYILGESGVGKELVARTIHEQSVRAAGAFVPVNCGAIPVDLMESEFFGHKKGSFTGAHTDKPGLFQSAGGGTLFLD
EVAELPLHMQVKLLRAIQEKSIRPIGATVEVPVDVRILSATHQDLSDLIANGRFRHDLYYRINVIEIRVPPLRERAGDLP
HLAAAIVARLAHTHGRAVPLLSPSALEALEHYSFPGNVRELENILERALALTEDDHIGAADLHLPQGSLHGQGLPLPLVP
TVLPIVPADASASVEGENTPAALPSYMEQLERAAIQKALEENRWNKTKTAAKLGITFRALRYKLKKLGME

Nucleotide

• Length: 1413 bp

>NTDB_id=30578 XFASM23_RS10235 WP_004090373.1 2277462..2278874(-) (pilR) [Xylella fastidiosa M23]
ATGAATGAATCCCGCAGTGCTCTGATTGTCGATGACGAGCGCGACATCCGTGAACTTTTGGTCCTTACGCTAGGACGTAT
GGGGCTGCGTATCAGAACGGCAGCTAATCTGGCACAAGCATACGCGTTACTTGAGTCTGACTCGTTCAATCTTTGTATCA
CCGACATGCGTTTACCTGACGGCAGTGGCATTGAGCTGGTGAAAAAGATTGTGCGTCATTATCCACGCACCCCGGTGGCC
ATGATCACTGCTTTTGGCAGTATCGAACTGGCGGTAGAGGCGCTCAAGGAAGGTGCTTTTGACTTTGTCAGCAAACCTGT
TGATCTGAACGTCCTGCGAGGCATGGTCCGTCATGCTTTGGAATTGAACAATCGTGAACGCTCTGTTGTGTCAAGTCAGC
CACAAAGCCCCAGCCAACGTCTCCTTGGTGAATCATCACCGATGGCTCAGCTTCGGGCCACCATCGCTAAAGTGGCGCGT
AGTCAAGCCCCGGTTTATATCCTTGGTGAATCAGGAGTTGGTAAAGAACTGGTTGCACGTACGATCCACGAACAGAGTGT
GCGTGCTGCTGGGGCGTTCGTGCCGGTCAACTGTGGTGCGATCCCTGTGGATCTTATGGAAAGCGAATTTTTCGGTCACA
AGAAAGGGAGTTTCACCGGTGCGCATACTGATAAGCCAGGTTTATTCCAAAGTGCTGGCGGCGGTACTTTATTCCTGGAT
GAAGTTGCCGAATTACCCTTGCACATGCAAGTTAAATTGCTGCGTGCGATTCAGGAGAAATCGATACGGCCAATCGGTGC
AACCGTTGAGGTACCAGTAGATGTGCGTATTTTATCGGCGACTCACCAAGATCTGAGTGACCTGATTGCCAATGGCCGCT
TCCGTCACGATTTGTACTACCGCATTAATGTAATCGAGATACGTGTTCCACCGCTACGTGAGCGTGCTGGCGATTTGCCG
CATCTTGCTGCAGCCATTGTGGCTCGCTTGGCACACACGCATGGGCGGGCGGTCCCGTTGCTTTCACCCTCCGCCTTGGA
GGCGTTAGAACATTATTCGTTCCCGGGTAATGTGCGTGAACTGGAGAACATTCTGGAGCGTGCTCTAGCACTGACTGAAG
ATGATCATATCGGTGCCGCGGATCTGCACCTGCCCCAGGGCAGTTTGCATGGACAGGGATTGCCGCTCCCGTTAGTGCCC
ACAGTTCTCCCGATTGTGCCTGCGGACGCATCAGCATCGGTGGAGGGTGAGAATACGCCGGCTGCCTTGCCCTCGTACAT
GGAGCAGCTGGAACGTGCTGCCATTCAAAAGGCGTTGGAAGAGAATCGCTGGAATAAAACAAAGACAGCCGCAAAACTTG
GCATCACTTTCCGTGCATTACGTTACAAACTAAAGAAGCTGGGTATGGAGTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-116)

• Bacterial regulatory protein, Fis family (HTH_8) (427-467)

3D structure

• AlphaFold DB: Q87AA0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	58.422	99.787	0.583
pilR	Acinetobacter baumannii strain A118	47.034	100	0.472