Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   DV167_RS04805 Genome accession   NZ_CP031329
Coordinates   830558..831055 (-) Length   165 a.a.
NCBI ID   WP_002251253.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22425     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 825558..836055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV167_RS04780 dapC 825912..827099 (-) 1188 WP_002251255.1 succinyldiaminopimelate transaminase -
  DV167_RS04785 dut 827175..827627 (-) 453 WP_002236894.1 dUTP diphosphatase -
  DV167_RS04790 - 827775..828200 (+) 426 Protein_784 AzlC family ABC transporter permease -
  DV167_RS04805 pilL 830558..831055 (-) 498 WP_002251253.1 PilX family type IV pilin Machinery gene
  DV167_RS04810 pilK 831060..831656 (-) 597 WP_002251252.1 pilus assembly protein Machinery gene
  DV167_RS04815 pilJ 831635..832597 (-) 963 WP_002251251.1 PilW family protein Machinery gene
  DV167_RS04820 pilV 832594..833205 (-) 612 WP_002251250.1 type IV pilus modification protein PilV Machinery gene
  DV167_RS04825 pilH 833235..833900 (-) 666 WP_002251249.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DV167_RS04830 dnaB 834209..835615 (-) 1407 WP_002213843.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18167.02 Da        Isoelectric Point: 9.7742

>NTDB_id=305776 DV167_RS04805 WP_002251253.1 830558..831055(-) (pilL) [Neisseria meningitidis strain M22425]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNTVKQIILKNPQDSNDILNIKLTMFVSGYKM
NPKIAEKYSVSGEFVDAPKSRANRALKSRAYRLVGVPKAGTGYTLSVWVNSVGDGYKCRDAASARAHLETLSADAGCEAF
SNRKK

Nucleotide


Download         Length: 498 bp        

>NTDB_id=305776 DV167_RS04805 WP_002251253.1 830558..831055(-) (pilL) [Neisseria meningitidis strain M22425]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATACTGTCAAAC
AGATTATTTTGAAAAATCCACAGGATAGTAATGATATCCTCAATATAAAACTGACAATGTTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAGTGTTTCGGGGGAATTTGTCGATGCGCCAAAATCAAGGGCAAACAGGGCGTTAAA
ATCAAGGGCATACAGGTTGGTCGGCGTTCCGAAGGCAGGGACGGGTTATACTTTGTCGGTATGGGTAAACAGCGTGGGCG
ACGGATACAAATGCCGTGATGCCGCTTCTGCCCGAGCCCATTTGGAGACCTTGTCCGCAGATGCCGGCTGTGAAGCCTTC
TCTAATCGTAAAAAATAA

Domains

Predicted by InterProScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-165)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

82.424

100

0.824
  pilX Neisseria meningitidis 8013

80.606

100

0.806

Multiple sequence alignment