Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   DV167_RS04815 Genome accession   NZ_CP031329
Coordinates   831635..832597 (-) Length   320 a.a.
NCBI ID   WP_002251251.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M22425     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 816932..839000 831635..832597 within 0


Gene organization within MGE regions


Location: 816932..839000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV167_RS04690 - 816932..817132 (+) 201 WP_002219431.1 hypothetical protein -
  DV167_RS04695 - 817200..817559 (+) 360 WP_002220694.1 hypothetical protein -
  DV167_RS04700 - 817584..818438 (+) 855 WP_002222642.1 YfdQ family protein -
  DV167_RS04705 - 818508..818723 (+) 216 WP_002222643.1 hypothetical protein -
  DV167_RS04710 - 818758..819018 (+) 261 WP_002223443.1 hypothetical protein -
  DV167_RS04715 - 819015..819308 (+) 294 WP_002220689.1 hypothetical protein -
  DV167_RS04720 - 819311..819502 (+) 192 WP_002219435.1 type ISP restriction/modification enzyme -
  DV167_RS04725 - 819502..819642 (+) 141 WP_002220688.1 hypothetical protein -
  DV167_RS04730 - 819639..819848 (+) 210 WP_002220687.1 hypothetical protein -
  DV167_RS04735 - 819906..820823 (-) 918 WP_002242564.1 KilA-N domain-containing protein -
  DV167_RS04740 - 821692..822171 (-) 480 WP_002241413.1 DUF4760 domain-containing protein -
  DV167_RS04750 - 822607..822987 (-) 381 WP_002220683.1 type II toxin-antitoxin system PemK/MazF family toxin -
  DV167_RS04755 - 823142..824338 (-) 1197 WP_002238460.1 integrase arm-type DNA-binding domain-containing protein -
  DV167_RS04770 yaaA 824871..825650 (-) 780 WP_002232311.1 peroxide stress protein YaaA -
  DV167_RS04780 dapC 825912..827099 (-) 1188 WP_002251255.1 succinyldiaminopimelate transaminase -
  DV167_RS04785 dut 827175..827627 (-) 453 WP_002236894.1 dUTP diphosphatase -
  DV167_RS04790 - 827775..828200 (+) 426 Protein_784 AzlC family ABC transporter permease -
  DV167_RS04805 pilL 830558..831055 (-) 498 WP_002251253.1 PilX family type IV pilin Machinery gene
  DV167_RS04810 pilK 831060..831656 (-) 597 WP_002251252.1 pilus assembly protein Machinery gene
  DV167_RS04815 pilJ 831635..832597 (-) 963 WP_002251251.1 PilW family protein Machinery gene
  DV167_RS04820 pilV 832594..833205 (-) 612 WP_002251250.1 type IV pilus modification protein PilV Machinery gene
  DV167_RS04825 pilH 833235..833900 (-) 666 WP_002251249.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DV167_RS04830 dnaB 834209..835615 (-) 1407 WP_002213843.1 replicative DNA helicase -
  DV167_RS04840 - 835778..836365 (+) 588 WP_002242525.1 superoxide dismutase -
  DV167_RS04860 - 838491..839000 (-) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 35608.46 Da        Isoelectric Point: 8.7140

>NTDB_id=305778 DV167_RS04815 WP_002251251.1 831635..832597(-) (pilJ) [Neisseria meningitidis strain M22425]
MRRKMLNVPKGSYDGMKGFTIIEFLVAGMLSMIVLMAVGSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVVSDVARKNPLFSLKNPLFSLKRNSTNKLIPITESLNINYQNFFQVDSALIFQYGIDDVNASTATTVVS
SCAAISKPGKQIPTLEDAKKELKISDQDKEQNGNIARQRHVVNAYAVGRIADEEGLFRFQLDDKDKWGNPQLLVKKVRRM
KVRYIYVSNCPEDDDAGKEETFKYTDKFDSAQNAVTPAGVEVLLSSGTDTKIAASSDNHIYAYRIDATIRGGNVCANRTL

Nucleotide


Download         Length: 963 bp        

>NTDB_id=305778 DV167_RS04815 WP_002251251.1 831635..832597(-) (pilJ) [Neisseria meningitidis strain M22425]
ATGAGACGTAAAATGCTAAACGTACCAAAAGGCAGTTATGATGGTATGAAGGGTTTTACCATTATTGAATTTTTGGTTGC
GGGCATGCTCAGTATGATTGTCCTGATGGCGGTCGGATCGAGTTACTTCACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTGTTTCCGATGTGGCGCGAAAAAACCCTCTTTTTTCCTTAAAAAA
CCCTCTTTTTTCCTTAAAAAGGAACAGTACAAATAAACTTATCCCCATAACGGAATCTTTAAATATCAATTATCAGAATT
TTTTCCAGGTTGATAGCGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCACCGCGACTACCGTCGTCAGC
AGCTGTGCCGCAATATCGAAACCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTTCGGATCA
GGATAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGG
AAGGTTTGTTCCGCTTCCAATTGGATGATAAGGACAAGTGGGGTAATCCTCAGTTGCTCGTGAAAAAGGTTAGACGTATG
AAAGTGCGGTATATCTATGTTTCCAACTGTCCTGAAGATGACGATGCCGGCAAAGAGGAAACATTCAAATATACGGATAA
ATTCGACAGCGCCCAAAATGCTGTTACGCCCGCCGGGGTGGAGGTTTTATTGAGTAGCGGTACTGATACCAAGATTGCCG
CTTCTTCAGACAATCATATTTATGCTTACCGTATCGATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTT
TGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

84.688

100

0.847

Multiple sequence alignment