Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV144_RS13240 Genome accession   NZ_CP031328
Coordinates   200953..201417 (-) Length   154 a.a.
NCBI ID   WP_162818857.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18755     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 195953..206417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV144_RS01120 - 197496..198551 (-) 1056 WP_002261652.1 DNA cytosine methyltransferase -
  DV144_RS01135 - 198957..199430 (-) 474 Protein_188 IS5/IS1182 family transposase -
  DV144_RS01145 - 199662..199874 (+) 213 WP_002224145.1 hypothetical protein -
  DV144_RS01155 comP 200416..200865 (-) 450 WP_002214937.1 type IV pilin protein Machinery gene
  DV144_RS13240 comE 200953..201417 (-) 465 WP_162818857.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16606.87 Da        Isoelectric Point: 10.8773

>NTDB_id=305759 DV144_RS13240 WP_162818857.1 200953..201417(-) (comE) [Neisseria meningitidis strain M18755]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCTFSLAAVNINA
ASLQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPADKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=305759 DV144_RS13240 WP_162818857.1 200953..201417(-) (comE) [Neisseria meningitidis strain M18755]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCACCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCTGCAGGAGTTGGAGGCGCTGCCGGGCATAGGTCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCCGTCGGCGCACCCGCACCAAAAGGCCCAGCTAAACCAGTGCTGCCCGCGGATAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment