Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   DV144_RS10140 Genome accession   NZ_CP031328
Coordinates   1707918..1708514 (-) Length   198 a.a.
NCBI ID   WP_115430835.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18755     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1702918..1713514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV144_RS10115 dapC 1703730..1704917 (-) 1188 WP_101093293.1 succinyldiaminopimelate transaminase -
  DV144_RS10120 dut 1704994..1705446 (-) 453 WP_115430833.1 dUTP diphosphatase -
  DV144_RS10135 pilL 1707416..1707913 (-) 498 WP_205254973.1 PilX family type IV pilin Machinery gene
  DV144_RS10140 pilK 1707918..1708514 (-) 597 WP_115430835.1 pilus assembly protein Machinery gene
  DV144_RS10145 pilJ 1708493..1709434 (-) 942 WP_115430836.1 PilW family protein Machinery gene
  DV144_RS10150 pilV 1709431..1710042 (-) 612 WP_115430906.1 type IV pilus modification protein PilV Machinery gene
  DV144_RS10155 pilH 1710075..1710752 (-) 678 WP_115430837.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DV144_RS10160 dnaB 1711061..1712467 (-) 1407 WP_115430838.1 replicative DNA helicase -
  DV144_RS10170 - 1712629..1713216 (+) 588 WP_002219449.1 superoxide dismutase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21688.61 Da        Isoelectric Point: 7.5808

>NTDB_id=305744 DV144_RS10140 WP_115430835.1 1707918..1708514(-) (pilK) [Neisseria meningitidis strain M18755]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYDT
DSKVTFSENCEKGLCTAVNVRTNNTGNEEAFDNIVVQGKPTVEAVKRSCTAKSTGLCIDNKGMEYKKGKGSVSKPPRYII
EYLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=305744 DV144_RS10140 WP_115430835.1 1707918..1708514(-) (pilK) [Neisseria meningitidis strain M18755]
ATGCGCAAACAGAACGCTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCATTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATACTGGTAA
TGAAGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCACTGCAAAATCTA
CAGGCCTGTGCATTGACAATAAAGGGATGGAATATAAGAAAGGCAAGGGAAGCGTCAGCAAACCACCACGCTATATTATC
GAATATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGT
CGTCCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-193)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

88.119

100

0.899

Multiple sequence alignment