Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   DV144_RS10155 Genome accession   NZ_CP031328
Coordinates   1710075..1710752 (-) Length   225 a.a.
NCBI ID   WP_115430837.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M18755     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1705075..1715752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV144_RS10135 pilL 1707416..1707913 (-) 498 WP_205254973.1 PilX family type IV pilin Machinery gene
  DV144_RS10140 pilK 1707918..1708514 (-) 597 WP_115430835.1 pilus assembly protein Machinery gene
  DV144_RS10145 pilJ 1708493..1709434 (-) 942 WP_115430836.1 PilW family protein Machinery gene
  DV144_RS10150 pilV 1709431..1710042 (-) 612 WP_115430906.1 type IV pilus modification protein PilV Machinery gene
  DV144_RS10155 pilH 1710075..1710752 (-) 678 WP_115430837.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  DV144_RS10160 dnaB 1711061..1712467 (-) 1407 WP_115430838.1 replicative DNA helicase -
  DV144_RS10170 - 1712629..1713216 (+) 588 WP_002219449.1 superoxide dismutase -
  DV144_RS10190 - 1715201..1715710 (-) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 25069.59 Da        Isoelectric Point: 9.6404

>NTDB_id=305747 DV144_RS10155 WP_115430837.1 1710075..1710752(-) (pilH) [Neisseria meningitidis strain M18755]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKGGAPN
NKCDFGKKGQGMLAFGDKNGNKTYDGDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
NQDLTNTSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRNDRRNDRRAVCQH

Nucleotide


Download         Length: 678 bp        

>NTDB_id=305747 DV144_RS10155 WP_115430837.1 1710075..1710752(-) (pilH) [Neisseria meningitidis strain M18755]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGAGAAGCCGTCCGGCTCAATCTTCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGGCGGTGCGCCCAAC
AATAAATGTGACTTCGGCAAGAAGGGGCAGGGAATGTTGGCTTTTGGCGATAAGAATGGCAATAAGACATATGACGGCGA
TACGGCGGATGTTCTCCTTCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTTGGTCAGACTCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATTCTACC
AATCAGGATCTCACGAATACTTCCAAATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGCCCTAGAAACG
ATAGGCGTAACGATAGGCGTGCCGTATGCCAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

85.778

100

0.858

Multiple sequence alignment