Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   DV155_RS07540 Genome accession   NZ_CP031326
Coordinates   1265722..1266186 (+) Length   154 a.a.
NCBI ID   WP_011799029.1    Uniprot ID   -
Organism   Neisseria meningitidis strain M21374     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1260722..1271186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV155_RS07540 comE 1265722..1266186 (+) 465 WP_011799029.1 helix-hairpin-helix domain-containing protein Machinery gene
  DV155_RS07545 comP 1266274..1266723 (+) 450 WP_002221685.1 type IV pilin protein Machinery gene
  DV155_RS13995 - 1266884..1267207 (-) 324 WP_202052896.1 5'-nucleotidase -
  DV155_RS07555 - 1267420..1267770 (+) 351 Protein_1241 IS5/IS1182 family transposase -
  DV155_RS07560 - 1267796..1268761 (-) 966 WP_002216744.1 IS30-like element IS1655 family transposase -
  DV155_RS07565 - 1268851..1268976 (+) 126 Protein_1243 IS5/IS1182 family transposase -
  DV155_RS07575 - 1269382..1270437 (+) 1056 WP_002221681.1 DNA cytosine methyltransferase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16519.75 Da        Isoelectric Point: 10.9695

>NTDB_id=305697 DV155_RS07540 WP_011799029.1 1265722..1266186(+) (comE) [Neisseria meningitidis strain M21374]
MLYPEKMSGMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKGPAKPAIPAAKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=305697 DV155_RS07540 WP_011799029.1 1265722..1266186(+) (comE) [Neisseria meningitidis strain M21374]
TTGCTTTACCCGGAAAAAATGTCGGGGATGGCGGGACGGCATCCGTACGGCGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCGGGCATAGGCCCTGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTGGACGATTTGACCAAGGTAAAGGGCATCGGCCCTGCGGTGCTGGCGAAGCTGAAGGATCAGG
CTTCTGTCGGCGCGCCCGCACCAAAAGGCCCAGCCAAACCGGCTATACCGGCCGCTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734
  comE Neisseria gonorrhoeae MS11

92.623

79.221

0.734

Multiple sequence alignment