Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EXA01_RS04050 Genome accession   NZ_CP035846
Coordinates   805771..806400 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain TW10598     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 800771..811400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXA01_RS04035 helD 801013..803067 (-) 2055 WP_001295354.1 DNA helicase IV -
  EXA01_RS04040 yccF 803190..803636 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EXA01_RS04045 yccS 803646..805808 (+) 2163 WP_000875061.1 YccS family putative transporter -
  EXA01_RS04050 sxy/tfoX 805771..806400 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EXA01_RS04055 sulA 806619..807128 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EXA01_RS04060 ompA 807485..808525 (+) 1041 WP_000750416.1 porin OmpA -
  EXA01_RS04065 matP 808601..809053 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EXA01_RS04070 ycbZ 809239..810999 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=305698 EXA01_RS04050 WP_000839153.1 805771..806400(-) (sxy/tfoX) [Escherichia coli strain TW10598]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=305698 EXA01_RS04050 WP_000839153.1 805771..806400(-) (sxy/tfoX) [Escherichia coli strain TW10598]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment