Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   DV115_RS09810 Genome accession   NZ_CP031325
Coordinates   1742068..1745682 (-) Length   1204 a.a.
NCBI ID   WP_003750806.1    Uniprot ID   -
Organism   Neisseria polysaccharea strain M18661     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1737068..1750682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV115_RS09780 - 1737561..1738001 (+) 441 WP_003750796.1 hypothetical protein -
  DV115_RS09785 hemE 1738155..1739219 (+) 1065 WP_003750798.1 uroporphyrinogen decarboxylase -
  DV115_RS09790 radA 1739409..1740788 (+) 1380 WP_025456689.1 DNA repair protein RadA Machinery gene
  DV115_RS09795 - 1741059..1741538 (-) 480 WP_025456690.1 DUF302 domain-containing protein -
  DV115_RS09805 - 1741670..1742029 (-) 360 WP_003750804.1 rhodanese-like domain-containing protein -
  DV115_RS09810 recB 1742068..1745682 (-) 3615 WP_003750806.1 exodeoxyribonuclease V subunit beta Machinery gene
  DV115_RS09815 - 1745915..1746823 (-) 909 WP_025456691.1 Dyp-type peroxidase -
  DV115_RS09825 - 1747092..1747919 (+) 828 WP_003750809.1 amino acid ABC transporter substrate-binding protein -
  DV115_RS09830 - 1747909..1748625 (+) 717 WP_025456693.1 amino acid ABC transporter permease -
  DV115_RS09835 - 1748635..1749390 (+) 756 WP_003750812.1 amino acid ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 1204 a.a.        Molecular weight: 134380.01 Da        Isoelectric Point: 5.4807

>NTDB_id=305660 DV115_RS09810 WP_003750806.1 1742068..1745682(-) (recB) [Neisseria polysaccharea strain M18661]
MSASIQAFDPLTVPISGTNLIEASAGTGKTYGIAALFTRLIILEQKNVERVLVVTFTKAATAELKTRLRARLDDVLQVLE
SKEIAKLGDGALSDGIAAYCAEHHEGDTFLPALLEQALQKEGRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLC
QAPFDVKLTEEDGDRLLVPAQDFWRERVSGDPVLAALAFKRKTVPQTVLAQIRAYLSRPYLSFRLPQADLPQSRDAALAS
WQNICGNLAELKEFFWRIHPLLNGNSYRKNSFAELFDALEQKALSPDLPFLEAKLHERLLKLSSDKLEAGLKKGKTPDAA
VFAELQKLADFGRDLNALEEAEEATIIRLQLDLIGYLNSSLAEMKKSRRERGFDDLLLDVHTALTDNPHAETLARAVAEN
WETALIDEFQDTDPLQYEIFQKIFIARNRPLFLVGDPKQAIYSFRGADIYAYLQAAEDAQHRYTLATNYRSHAALIGSIG
ALFRLKEHPFVLENIGYSEVGAARAESRLSPKRPAVQLRWLHENDNEKANKDVLRRRAADYCADEIAHALNEAAGCRLNF
KGRPLQSGDIAVLVRTHNEAVMVSATLKKRQVQSVLLSRESVFASPEAAALSALIGFWLEPRRAGTLRFVLTSSIFGFDA
QQLHDFNQNESEILHWAESARTALDNWNKYGIFAAMQQFSQTHGIETRLLSRNNGRSLTNYFQLLELLAAEDAQNRNPAA
LHKWLRDQISLAGNNGGDNRAIRLESDEDLVKIVTMHASKGLQYPLVYCPFAWDAQDTGPSDWQILHQSANRTELLAKAQ
LSEDEQKQYADEEMAERLRLLYVALTRAEEQLNIYAAYSSDTANNPLAYLIEGLPQDSRETVRRAYACEKDGIAMLKRNW
RRVADNAPSGTDFAFTEDAPPPAVYCGNADQTAEFAANSIPERGFRFVRHTSFTALSRHTQTPDGGEEDACPSLDAAETS
VPAMPSETPTASDGISVHDFPKGTQAGLCLHEILEDFKFGQAAAEQETLIADKLKKYGFEEIWLPAVAEMAEACRKTPLT
GAYGLSDIPPECRCPEMGFTLHTEDFGIKRLRDWFARDDVRLPEVCRAAAETLDFHTVNGFLNGFIDMVCQDPDGNICII
DYKSNYLGADASAYTRQAMDEAVAHHHYYLQALIYAVAAARYFKLRGQPPAAVSVRYLFLRGLDGKGGGVWRWDIDAAAL
EQIK

Nucleotide


Download         Length: 3615 bp        

>NTDB_id=305660 DV115_RS09810 WP_003750806.1 1742068..1745682(-) (recB) [Neisseria polysaccharea strain M18661]
ATGTCTGCAAGCATCCAAGCATTCGACCCGCTAACCGTCCCCATTTCCGGCACCAACCTGATTGAGGCCTCTGCCGGCAC
CGGCAAAACCTACGGCATTGCCGCCCTGTTTACACGTTTGATCATATTAGAACAAAAAAACGTCGAACGCGTATTGGTCG
TAACCTTCACCAAAGCCGCCACCGCCGAACTGAAAACACGCCTGCGCGCGCGTTTGGACGATGTGTTGCAGGTTTTAGAA
AGCAAAGAAATTGCCAAACTTGGAGACGGCGCGCTTTCAGACGGCATTGCCGCCTACTGCGCCGAACACCACGAAGGCGA
CACCTTCCTGCCCGCACTCTTGGAACAGGCTTTGCAAAAAGAGGGCCGGACGCGTCTGATTGTCCGCCTCAAAGCCGCCA
TCGGGCAATTCGACAACGCCGCCATCTACACCATCCACGGCTTCTGCCAGCGCATCCTGCGCGACTACGCCTTTCTGTGC
CAAGCCCCGTTCGATGTCAAACTGACCGAAGAAGACGGCGACCGCCTGCTTGTCCCGGCTCAAGATTTTTGGCGCGAACG
CGTCAGCGGCGATCCGGTGCTTGCCGCATTGGCGTTTAAACGCAAAACTGTGCCGCAAACCGTCCTTGCCCAAATCCGCG
CCTACCTCTCCCGCCCGTACCTGAGTTTCCGCCTTCCGCAGGCGGATTTGCCGCAATCCCGGGATGCCGCTTTGGCAAGC
TGGCAAAACATTTGCGGAAATCTGGCTGAATTAAAAGAATTTTTTTGGCGCATCCACCCCCTTTTAAACGGCAATTCGTA
TCGGAAAAACAGTTTTGCCGAACTGTTTGACGCGTTGGAACAAAAAGCCCTGTCGCCGGATTTGCCCTTTTTGGAGGCAA
AGCTGCACGAACGGCTCTTGAAACTCTCATCCGACAAACTCGAAGCCGGACTGAAAAAAGGCAAAACGCCCGATGCGGCA
GTATTTGCCGAATTGCAGAAACTGGCAGACTTCGGGCGCGATTTGAACGCACTCGAAGAAGCGGAAGAAGCAACAATAAT
CCGGCTGCAACTGGATTTAATCGGATACCTCAACAGCAGCCTTGCCGAAATGAAAAAATCGCGCCGCGAACGCGGTTTCG
ACGACCTGCTGCTCGATGTCCACACCGCACTGACCGACAACCCCCACGCCGAAACCCTCGCCCGCGCCGTTGCCGAAAAC
TGGGAAACCGCGCTGATCGACGAGTTCCAAGACACCGACCCGCTGCAATACGAAATCTTCCAAAAGATTTTCATCGCCCG
AAACCGCCCGCTGTTTTTGGTCGGCGACCCCAAACAGGCGATTTACAGCTTTCGCGGTGCGGACATTTACGCCTACCTTC
AGGCGGCGGAAGACGCGCAGCACCGCTACACGCTCGCCACCAACTACCGCAGCCACGCCGCGCTTATCGGCAGCATCGGC
GCGCTGTTCCGCCTCAAAGAACACCCGTTCGTCTTGGAAAACATCGGCTATTCGGAAGTCGGTGCGGCGCGTGCCGAAAG
CAGGTTGTCGCCCAAACGTCCTGCCGTACAGCTCCGTTGGCTGCACGAAAACGACAATGAAAAAGCCAACAAAGACGTTT
TGCGCCGCCGTGCCGCCGACTATTGCGCCGACGAAATCGCCCACGCGCTCAACGAAGCCGCCGGATGCCGTCTGAATTTC
AAAGGCCGCCCGTTGCAGTCGGGCGATATTGCCGTGCTGGTCCGCACGCACAACGAGGCGGTGATGGTTTCCGCCACCCT
GAAAAAACGGCAGGTGCAAAGCGTCCTGCTTTCGCGCGAATCCGTGTTCGCCTCGCCCGAAGCCGCCGCCCTTTCCGCAC
TCATCGGCTTCTGGCTTGAACCGCGCCGCGCCGGAACGCTGCGCTTTGTCCTGACAAGCAGCATATTCGGTTTTGACGCG
CAGCAATTGCACGACTTCAACCAAAACGAAAGCGAAATTTTGCATTGGGCGGAATCTGCCCGAACCGCGCTCGACAACTG
GAATAAATACGGCATTTTCGCCGCCATGCAACAGTTTTCCCAAACACACGGCATCGAAACGCGCCTCTTAAGCCGGAACA
ACGGGCGCAGCCTGACCAATTATTTCCAACTGCTCGAACTGCTTGCCGCCGAAGACGCGCAAAACCGCAACCCCGCCGCA
CTGCACAAATGGCTGCGCGATCAAATCAGCCTGGCTGGCAACAACGGCGGCGACAACCGCGCCATCCGTTTGGAAAGCGA
CGAAGATTTGGTCAAAATCGTTACCATGCACGCCTCGAAAGGTTTGCAGTATCCGCTGGTGTACTGTCCGTTTGCGTGGG
ACGCACAAGATACCGGGCCGTCCGACTGGCAAATCCTCCACCAAAGCGCAAACCGAACCGAACTGTTGGCAAAGGCGCAA
CTGTCGGAAGACGAACAGAAGCAATACGCCGATGAAGAAATGGCGGAACGCCTGCGCCTGCTTTATGTCGCGCTGACGCG
TGCCGAAGAACAGCTCAACATCTACGCCGCCTATTCTTCCGATACCGCCAACAACCCCCTCGCCTACCTGATTGAAGGCT
TGCCGCAAGACAGCCGCGAAACCGTCCGCCGTGCCTATGCGTGTGAAAAAGACGGCATCGCGATGCTCAAACGCAACTGG
CGGCGCGTGGCGGACAACGCCCCTTCCGGCACGGATTTCGCCTTCACAGAAGATGCGCCGCCCCCTGCCGTATATTGCGG
CAACGCCGATCAAACCGCCGAATTTGCCGCAAACAGCATTCCCGAACGCGGATTCCGATTTGTCCGCCACACCAGCTTTA
CCGCCTTAAGCCGCCATACCCAAACGCCCGACGGCGGCGAAGAAGATGCCTGCCCGTCCTTGGATGCCGCCGAAACCTCG
GTACCGGCGATGCCGTCTGAAACGCCGACGGCTTCAGACGGCATATCGGTACACGACTTTCCGAAAGGTACGCAGGCGGG
GCTGTGCCTGCACGAAATTCTTGAAGATTTCAAATTCGGACAAGCAGCCGCCGAACAGGAAACCCTCATTGCCGACAAGC
TGAAGAAATACGGTTTTGAAGAAATATGGCTGCCCGCCGTTGCCGAAATGGCGGAAGCATGCCGGAAAACGCCGCTGACG
GGGGCATACGGCCTGTCCGACATTCCGCCCGAGTGCCGCTGTCCCGAAATGGGCTTTACCCTCCATACCGAAGACTTCGG
CATCAAACGGCTGCGCGACTGGTTTGCCCGCGACGATGTCCGGCTGCCCGAAGTCTGCCGTGCCGCTGCCGAAACGCTCG
ACTTCCACACCGTCAACGGCTTTTTAAACGGCTTTATCGATATGGTCTGCCAAGACCCCGACGGCAATATCTGCATCATC
GACTACAAATCAAACTACCTCGGCGCGGACGCATCCGCCTACACGCGGCAGGCGATGGACGAGGCCGTCGCGCACCACCA
CTATTACCTTCAGGCACTGATTTACGCCGTTGCCGCCGCGCGCTACTTCAAACTGCGCGGACAACCGCCCGCCGCCGTTT
CCGTCCGCTACCTGTTTTTGCGCGGATTGGATGGCAAAGGCGGCGGCGTTTGGCGTTGGGACATAGATGCCGCCGCTTTG
GAACAGATAAAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(744-835)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(15-459)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1074-1182)

UvrD-like helicase C-terminal domain (UvrD_C)

(463-651)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

93.023

100

0.93

Multiple sequence alignment