Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DV115_RS09790 Genome accession   NZ_CP031325
Coordinates   1739409..1740788 (+) Length   459 a.a.
NCBI ID   WP_025456689.1    Uniprot ID   -
Organism   Neisseria polysaccharea strain M18661     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1734409..1745788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DV115_RS09770 - 1734974..1736308 (+) 1335 WP_025456688.1 uroporphyrinogen-III C-methyltransferase -
  DV115_RS09775 - 1736305..1737528 (+) 1224 WP_003750795.1 heme biosynthesis protein HemY -
  DV115_RS09780 - 1737561..1738001 (+) 441 WP_003750796.1 hypothetical protein -
  DV115_RS09785 hemE 1738155..1739219 (+) 1065 WP_003750798.1 uroporphyrinogen decarboxylase -
  DV115_RS09790 radA 1739409..1740788 (+) 1380 WP_025456689.1 DNA repair protein RadA Machinery gene
  DV115_RS09795 - 1741059..1741538 (-) 480 WP_025456690.1 DUF302 domain-containing protein -
  DV115_RS09805 - 1741670..1742029 (-) 360 WP_003750804.1 rhodanese-like domain-containing protein -
  DV115_RS09810 recB 1742068..1745682 (-) 3615 WP_003750806.1 exodeoxyribonuclease V subunit beta Machinery gene

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49519.05 Da        Isoelectric Point: 7.6109

>NTDB_id=305659 DV115_RS09790 WP_025456689.1 1739409..1740788(+) (radA) [Neisseria polysaccharea strain M18661]
MAKTLKTLYQCTGCGGTSPKWQGKCPHCGEWNTLQESLAAPDPKNARFQSWAADTSTVQSLSTVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTDGVNLLAEIRMEAIQAA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPKLKIYGVSSLQEAIDICREDRD

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=305659 DV115_RS09790 WP_025456689.1 1739409..1740788(+) (radA) [Neisseria polysaccharea strain M18661]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACTGGATGCGGCGGCACTTCCCCGAAATGGCAAGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCTTAGCCGCGCCCGATCCGAAAAACGCCCGTTTCCAATCTTGGGCGGCGG
ATACCTCGACCGTCCAGTCCCTCTCCACCGTGACCGCCACCGAAGTGCCGCGCAATCCGACCGGTATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGCGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GCTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAAGAATCCGCCCAACAGGTCGCCC
TGCGCGCGCAACGTTTGGAACTGCCGACCGACGGCGTAAACCTGCTTGCCGAAATCCGCATGGAAGCGATTCAGGCGGCC
TTGAAACAGCATCAGCCCGAAGTCGTCGTTATCGACTCCATCCAAACCATGTATTCCGACCAAATCACTTCCGCCCCCGG
CTCCGTGTCGCAGGTGCGCGAATGTGCCGCCCAACTGACGCGTATGGCGAAACAAATGGGTATCGCCATGATATTGGTCG
GACACGTCACCAAAGACGGCGCGATTGCCGGTCCGCGCGTGCTGGAACACATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGTTTTGGCGCGGCAAACGAATTGGGCGTATTCGCCAT
GACAGAAAACGGTTTGAAAGGCGTATCCAACCCGTCCGCCATCTTCCTTGCCAGCTACCGCGACGACACGCCTGGTTCGT
GCGTTTTGGTCACACAGGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGACGCGCACGGTTTTACC
CCCAAACGTCTCACCGTTGGCCTCGAACAAAACCGCCTCGCCATGCTGCTCGCCGTCCTCAACCGCCACGGCGGCATCGC
CTGTTTCGATCAGGATGTGTTTTTAAACGCCGTCGGCGGCGTGAAAATCGGCGAACCGGCGGCGGATTTGGCAGTCATCC
TTGCGATGCTTTCCAGCTTCCGCAACCGCCCTATGCCTGAAAAAACCGTGGTTTTCGGCGAAATCGGACTAAGCGGCGAA
GTCCGCCCCGTCGCACGCGGACAAGAGCGGCTCAAAGAGGCGGAAAAACTCGGCTTCAAACGCGCCATCGTCCCCAAAGC
CAATATGCCGCGCAATGCCAAAGAGTTTCCGAAACTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATTGATATTT
GTCGGGAAGATAGGGATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-220)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.658

99.346

0.503
  radA Streptococcus pneumoniae Rx1

47.566

98.475

0.468
  radA Streptococcus pneumoniae D39

47.566

98.475

0.468
  radA Streptococcus pneumoniae TIGR4

47.566

98.475

0.468
  radA Streptococcus pneumoniae R6

47.566

98.475

0.468
  radA Streptococcus mitis NCTC 12261

47.345

98.475

0.466
  radA Streptococcus mitis SK321

47.228

98.257

0.464

Multiple sequence alignment